Table 3 |
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|
Details of the 23 CACNA1S haplotypes with an estimated population frequency ≥ 0.01 in at least one group. |
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|
Haplotype Name |
rs1546416 |
rs12029212 |
rs7415038 |
rs10920105 |
rs9427714 |
rs2296383 |
rs1536129 |
rs1325309 |
Estimated haplotype frequencies (Std Error)a |
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|
|
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|
MHS |
PC |
50 sequenced samples |
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|
|
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|
H1 |
2 |
2 |
1 |
1 |
1 |
1 |
1 |
1 |
0.084 (0.008) |
0.081 (0.007) |
0.081 (0.018) |
|
|
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|
H2 |
1 |
2 |
1 |
1 |
1 |
1 |
1 |
1 |
0.047 (0.007) |
0.075 (0.006) |
0.055 (0.018) |
|
|
|||||||||||
|
H3 |
2 |
2 |
2 |
1 |
2 |
2 |
1 |
1 |
0.065 (0.007) |
0.059 (0.007) |
0.044 (0.014) |
|
|
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|
H4 |
2 |
2 |
2 |
2 |
2 |
2 |
2 |
1 |
0.05 (0.006) |
0.046 (0.006) |
0.07 (0.018) |
|
|
|||||||||||
|
H5 |
2 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
0.043 (0.008) |
0.04 (0.005) |
0.099 (0.019) |
|
|
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|
H6 |
2 |
2 |
2 |
1 |
2 |
2 |
2 |
2 |
0.03 (0.005) |
0.05 (0.005) |
0.016 (0.009) |
|
|
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|
H7 |
1 |
2 |
1 |
1 |
1 |
2 |
2 |
1 |
0.03 (0.005) |
0.04 (0.004) |
0.012 (0.01) |
|
|
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|
H8 |
2 |
2 |
2 |
1 |
2 |
2 |
1 |
2 |
0.035 (0.005) |
0.032 (0.007) |
0.035 (0.009) |
|
|
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|
H9 |
2 |
2 |
2 |
2 |
2 |
1 |
1 |
1 |
0.031 (0.005) |
0.036 (0.004) |
0.017 (0.012) |
|
|
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|
H10 |
2 |
2 |
1 |
1 |
1 |
1 |
1 |
2 |
0.036 (0.006) |
0.027 (0.005) |
0.03 (0.012) |
|
|
|||||||||||
|
H11 |
2 |
2 |
2 |
1 |
2 |
2 |
2 |
1 |
0.026 (0.005) |
0.029 (0.004) |
0.029 (0.011) |
|
|
|||||||||||
|
H12 |
1 |
2 |
1 |
1 |
1 |
1 |
1 |
2 |
0.017 (0.004) |
0.032 (0.005) |
0.03 (0.012) |
|
|
|||||||||||
|
H13 |
1 |
2 |
2 |
1 |
2 |
2 |
1 |
1 |
0.026 (0.006) |
0.018 (0.003) |
0.03 (0.013) |
|
|
|||||||||||
|
H14 |
1 |
2 |
1 |
2 |
2 |
2 |
1 |
2 |
0.029 (0.004) |
0.014 (0.003) |
0.058 (0.01) |
|
|
|||||||||||
|
H15 |
2 |
2 |
2 |
2 |
2 |
2 |
2 |
2 |
0.025 (0.005) |
0.02 (0.005) |
0.029 (0.015) |
|
|
|||||||||||
|
H16 |
1 |
2 |
2 |
2 |
2 |
2 |
2 |
1 |
0.02 (0.006) |
0.014 (0.004) |
0.03 (0.014) |
|
|
|||||||||||
|
H17 |
2 |
2 |
2 |
2 |
2 |
1 |
1 |
2 |
0.021 (0.005) |
0.019 (0.004) |
0.015 (0.01) |
|
|
|||||||||||
|
H18 |
1 |
2 |
1 |
1 |
1 |
2 |
2 |
2 |
0.018 (0.005) |
0.017 (0.003) |
0.01 (0.009) |
|
|
|||||||||||
|
H19 |
2 |
2 |
2 |
2 |
2 |
2 |
1 |
1 |
0.017 (0.004) |
0.018 (0.003) |
0.005 (0.006) |
|
|
|||||||||||
|
H20 |
2 |
1 |
1 |
1 |
1 |
1 |
1 |
2 |
0.006 (0.003) |
0.025 (0.006) |
0.026 (0.013) |
|
|
|||||||||||
|
H21 |
1 |
1 |
2 |
2 |
2 |
1 |
1 |
1 |
0.015 (0.004) |
0.01 (0.002) |
0.006 (0.007) |
|
|
|||||||||||
|
H22 |
1 |
2 |
2 |
2 |
2 |
2 |
1 |
2 |
0.017 (0.004) |
0.006 (0.002) |
0.005 (0.007) |
|
|
|||||||||||
|
H23 |
2 |
2 |
2 |
2 |
2 |
2 |
1 |
2 |
0.019 (0.004) |
0.007 (0.003) |
0.015 (0.01) |
|
|
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|
aThe estimated haplotype frequencies and standard errors (Std Error) were calculated separately for each of the MHS, Population Control and 50 cDNA CACNA1S sequenced samples using the program PHASE. |
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|
Carpenter et al. BMC Medical Genetics 2009 10:104 doi:10.1186/1471-2350-10-104 |
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