Table 1

STEC O157 strains used for sequence polymorphism discovery in the tir gene and a representative strain from each tir genotype

Strain

H antigen

Collection

Source

Reference

Discovery panel

tir genotypea


N245

H7

USMARC

Bovine

This paper

N

1

SS NE 1040

H7

USMARC

Bovine

[49]

N

2

CO 50-1

H7

USMARC

Bovine

[49]

Y

3

NE 972-1

H7

USMARC

Bovine

[49]

Y

3

KS 368-1

H7

USMARC

Bovine

[49]

Y

4

KS 546-2

H7

USMARC

Bovine

[49]

Y

4

NE 1370-3

H7

USMARC

Bovine

[49]

Y

4

TX 265-1

H7

USMARC

Bovine

[49]

Y

4

TX 376-2

H7

USMARC

Bovine

[49]

Y

4

TX 723-1

H7

USMARC

Bovine

[49]

Y

4

CO 147-1

H7

USMARC

Bovine

[49]

Y

4

NE 1127-1

H7

USMARC

Bovine

[49]

Y

5

TW07587

H7

EHEC 1–3

Human

[50]

Y

5

2

NM

Acheson

Human

b

Y

5

USDA81

H7

CDC

Human

This paper

N

6

CO 713-5

H7

USMARC

Bovine

[49]

Y

7

MARC 611

H7

USMARC

Bovine

[49]

Y

7

NE 1270-2

H7

USMARC

Bovine

[49]

Y

7

31277

H7

IDPH

Human

c

Y

7

1

H7

Mandrell

Human

d

Y

7

35150

H7

ATCC

Human

ATCC

Y

7

43889

H7

ATCC

Human

ATCC

Y

7

43890

H7

ATCC

Human

ATCC

Y

7

Sakai

H7

RMID

Human

[45]

Y

7

TW04863

H7

EHEC 1–2

Human

[50]

Y

7

N4009-114-4

H7

APHIS

Bovine

This paper

N

8

TW06555

H7

EHEC 1–6

Human

[50]

N

9

TW00116

H7

EHEC 1–4

Human

[50]

N

10


a As described in Figure 1B.

b Dr. David Acheson, DHHS, FDA, College Park, MD.

c Enteric Lab, Illinois Department of Public Health.

d Dr. Robert Mandrell, USDA, ARS, Albany, CA.

Bono et al. BMC Infectious Diseases 2007 7:98   doi:10.1186/1471-2334-7-98

Open Data