Additional file 4.
Phylogenetic trees reconstructed from sequences obtained from patient P37 samples. Maximum likelihood tree reconstructed from full length NS5A region sequences obtained from samples of P37 (ETR) plus reference sequence of genotype 1b HCV-J. The number of 1000 permuted trees supporting a clade indicated when that proportion was greater than 70%. The same quasispecies are colored in red. Sequence with nonsense mutation is colored in blue.
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Jardim et al. BMC Infectious Diseases 2013 13:61 doi:10.1186/1471-2334-13-61