Table 2

Speciation of clinical and environmental Fusarium isolates collected in a Brazilain hospital
Species ID (EF-1α Identity match%) Isolate number Collection date Sample type Isolate source
FSSC (99.3) B8586 12/10/2005 Clinical HP01, blood
FSSC (100) B8659 10/16/2007 Clinical DP33, skin scraping
FSSC (99.1) B8684 7/13/2009 Clinical DP58, nail scraping
FSSC (99.6) B8685 7/31/2009 Clinical DP60, skin scraping
FSSC 1-a B8648 7/16/2007 Clinical DP26, nail scraping
FSSC 1-a B8593 7/19/2006 Clinical HP03, lesion swab
FSSC 1-a B8710 7/31/2007 Environmental BR06, shower swab
FSSC 1-a B8711 7/31/2007 Environmental BR06, shower swab
FSSC 1-a B8712 7/31/2007 Environmental BR06, wall swab
FSSC 1-a B8714 7/31/2007 Environmental BR06, wall swab
FSSC 1-a B8715 7/31/2007 Environmental BR06, wall swab
FSSC 1-a B8716 7/31/2007 Environmental BR06, wall swab
FSSC 1-a B8720 8/14/2007 Environmental BR07, shower swab
FSSC 1-a B8721 8/14/2007 Environmental BR07, shower swab
FSSC 1-a B8690 9/21/2006 Environmental BR10, wall swab
FSSC 1-a B8694 10/5/2006 Environmental BR11, floor swab
FSSC 1-a B8741 10/25/2007 Environmental BR12, shower swab
FSSC 1-a B8696 11/1/2006 Environmental BR03, air
FSSC 1-b B8589 4/17/2006 Clinical HP02, blood
FSSC 1-b B8590 4/17/2006 Clinical HP02, blood
FSSC 1-b B8591 4/20/2006 Clinical HP02, skin biopsy
FSSC 1-b B8700 11/1/2006 Environmental BR03, floor swab
FSSC 1-b B8717 7/31/2007 Environmental BR06, wall swab
FSSC 1-b B8728 8/31/2007 Environmental BR03, sink swab
FSSC 1-b B8744 10/26/2007 Environmental BR01, water
FSSC 1-b B8745 10/26/2007 Environmental BR01, water
FSSC 1-b B8662 10/31/2007 Clinical DP36, nail scraping
FSSC 1-b B8681 5/20/2009 Clinical DP55, skin scraping
FSSC 1-b B8757 7/6/2009 Environmental BR03, shower swab
FSSC 1-b B8760 7/6/2009 Environmental BR03, air
FSSC 1-b B8637 7/28/2009 Clinical HP17, biopsy
FSSC 1-b B8638 9/4/2009 Clinical HP18, blood
FSSC 1-b B8639 9/4/2009 Clinical HP18, blood
FSSC 1-b B8640 9/4/2009 Clinical HP18, blood
FSSC 2-d B8592 7/12/2006 Clinical HP03, blood
FSSC 2-d B8697 11/1/2006 Environmental BR03, air
FSSC 2-d B8601 4/10/2007 Clinical HP07, skin biopsy
FSSC 2-d B8602 4/10/2007 Clinical HP07, vesicle
FSSC 2-d B8643 6/14/2007 Clinical DP21, nail scraping
FSSC 2-d B8603 6/18/2007 Clinical HP08, blood
FSSC 2-d B8604 6/18/2007 Clinical HP08, blood
FSSC 2-d B8605 6/18/2007 Clinical HP08, blood
FSSC 2-d B8606 6/18/2007 Clinical HP08, skin biopsy
FSSC 2-d B8607 6/19/2007 Clinical HP08, skin swab
FSSC 2-d B8608 6/21/2007 Clinical HP08, sputum
FSSC 2-d B8609 7/4/2007 Clinical HP09, skin biopsy
FSSC 2-d B8683 7/10/2009 Clinical DP57, skin scraping
FSSC 2-d B8610 7/17/2007 Clinical HP09, blood
FSSC 2-d B8611 7/17/2007 Clinical HP09, blood
FSSC 2-d B8612 7/17/2007 Clinical HP09, blood
FSSC 2-d B8613 7/4/2007 Clinical HP09, skin swab
FSSC 2-d B8616 7/26/2007 Clinical HP10, skin scraping
FSSC 2-d B8617 7/26/2007 Clinical HP10, skin scraping
FSSC 2-d B8625 8/2/2007 Clinical HP11, nail scraping
FSSC 2-d B8626 8/7/2007 Clinical HP11, lesion swab
FSSC 2-d B8649 8/10/2007 Clinical DP22, nail scraping
FSSC 2-d B8650 8/17/2007 Clinical DP27, skin scraping
FSSC 2-d B8655 9/21/2007 Clinical DP32, skin scraping
FSSC 2-d B8661 10/31/2007 Clinical DP35, skin scraping
FSSC 2-d B8749 10/31/2007 Environmental BR07, water
FSSC 2-d B8750 10/31/2007 Environmental BR07, water
FSSC 2-d B8663 1/11/2008 Clinical DP37, nail scraping
FSSC 2-d B8668 4/8/2008 Clinical DP42, nail scraping
FSSC 2-d B8669 4/24/2008 Clinical DP43, skin scraping
FSSC 2-d B8673 9/26/2008 Clinical DP47, nail scraping
FSSC 2-d B8675 10/16/2008 Clinical DP49, nail scraping
FSSC 2-d B8631 12/1/2008 Clinical HP14, lesion aspirate
FSSC 2-d B8632 12/2/2008 Clinical HP14, skin biopsy
FSSC 2-d B8679 2/20/2009 Clinical DP53, nail scraping
FSSC 2-f B8587 12/14/2005 Clinical HP01, blood
FSSC 2-f B8588 12/14/2005 Clinical HP01, blood
FSSC 2-f B8692 9/21/2006 Environmental BR10, floor swab
FSSC 2-f B8596 12/26/2006 Clinical HP04, lesion ulcer
FSSC 2-f B8597 2/4/2007 Clinical HP05, blood
FSSC 2-f B8598 2/4/2007 Clinical HP05, blood
FSSC 2-f B8599 2/5/2007 Clinical HP05, skin biopsy
FSSC 2-f B8600 3/12/2007 Clinical HP06, nail scraping
FSSC 2-f B8644 6/18/2007 Clinical DP22, nail scraping
FSSC 2-f B8645 6/18/2007 Clinical DP23, skin scraping
FSSC 2-f B8615 7/26/2007 Clinical HP10, skin swab
FSSC 2-f B8651 9/6/2007 Clinical DP28, nail scraping
FSSC 2-f B8657 10/4/2007 Clinical DP28, nail scraping
FSSC 2-f B8666 3/7/2008 Clinical DP40, nail scraping
FSSC 2-f B8671 5/14/2008 Clinical DP45, nail scraping
FSSC 2-h B8665 1/22/2008 Clinical DP39, nail scraping
FSSC 2-i B8646 6/26/2007 Clinical DP24, nail scraping
FSSC 2-i B8653 9/21/2007 Clinical DP30, nail scraping
FSSC 2-i B8670 4/28/2008 Clinical DP44, nail scraping
FSSC 2-i B8678 1/26/2009 Clinical DP52, nail scraping
FSSC 2-i B8688 10/6/2009 Clinical DP63, nail scraping
FSSC 2-i B8687 10/8/2009 Clinical DP62, skin scraping
FSSC 2-k B8642 6/5/2007 Clinical DP20, skin scraping
FSSC 2-k B8647 7/2/2007 Clinical DP25, nail scraping
FSSC 2-k B8614 7/26/2007 Clinical HP10, skin swab
FSSC 2-k B8618 9/5/2007 Clinical HP10, sinovial fluid
FSSC 2-k B8619 9/5/2007 Clinical HP10, sinovial fluid
FSSC 2-k B8620 9/10/2007 Clinical HP10, sinovial fluid
FSSC 2-k B8621 9/10/2007 Clinical HP10, sinovial fluid
FSSC 2-k B8654 9/21/2007 Clinical DP31, skin scraping
FSSC 2-k B8656 9/24/2007 Clinical DP23, nail scraping
FSSC 2-k B8622 10/8/2007 Clinical HP10, sinovial fluid
FSSC 2-k B8623 10/9/2007 Clinical HP10, sinovial fluid
FSSC 2-k B8624 10/11/2007 Clinical HP10, sinovial fluid
FSSC 2-t B8594 7/19/2006 Clinical HP03, lesion swab
FSSC 2-t B8595 7/19/2006 Clinical HP03, lesion swab
FSSC 2-t B8658 10/16/2007 Clinical DP33, skin scraping
FSSC 2-u B8652 9/17/2007 Clinical DP29, nail scraping
FSSC 2-u B8674 10/13/2008 Clinical DP48, nail scraping
FSSC 3+4 (100) B8677 12/19/2008 Clinical DP51, skin scraping
FSSC 3+4 (100) B8636 1/29/2009 Clinical HP16, corneal ulcer swab
FSSC 5 (99.5) B8676 10/17/2008 Clinical DP50, nail scraping
FSSC 7 (99.7) B8634 1/5/2008 Clinical HP15, blood
FSSC 7 (99.7) B8635 1/5/2008 Clinical HP15, blood
FOSC (100) B8698 11/1/2006 Environmental BR03, shower swab
FOSC (100) B8660 10/26/2007 Clinical DP34, skin scraping
FOSC (99.7) B8667 3/27/2008 Clinical DP41, nail scraping
FOSC (100) B8672 8/18/2008 Clinical DP46, nail scraping
FOSC (99.9) B8633 12/18/2008 Clinical HP15, skin scraping
FOSC 33 (100) B8699 11/1/2006 Environmental BR03, wall swab
FOSC 33 (100) B8701 11/1/2006 Environmental BR03, sink swab
FOSC 33 (100) B8702 11/1/2006 Environmental BR03, sink swab
FOSC 33 (100) B8691 9/21/2006 Environmental BR10, sink swab
FOSC 33 (100) B8695 10/5/2006 Environmental BR11, sink swab
FOSC 33 (100) B8713 7/31/2007 Environmental BR06, wall swab
FOSC 33 (100) B8719 8/14/2007 Environmental BR04, sink swab
FOSC 33 (100) B8722 8/15/2007 Environmental Nephrology, wall swab
FOSC 33 (100) B8723 8/27/2007 Environmental BR01, sink swab
FOSC 33 (100) B8724 8/27/2007 Environmental BR01, faucet swab
FOSC 33 (100) B8726 8/27/2007 Environmental BR02, sink swab
FOSC 33 (100) B8727 8/27/2007 Environmental BR02, water
FOSC 33 (100) B8729 8/31/2007 Environmental BR05, sink swab
FOSC 33 (100) B8730 8/31/2007 Environmental BR05, sink swab
FOSC 33 (100) B8731 10/16/2007 Environmental BR08, sink swab
FOSC 33 (100) B8732 10/16/2007 Environmental BR08, sink swab
FOSC 33 (100) B8733 10/19/2007 Environmental BR09, shower swab
FOSC 33 (100) B8734 10/19/2007 Environmental BR09, shower swab
FOSC 33 (100) B8735 10/19/2007 Environmental BR09, shower swab
FOSC 33 (100) B8736 10/19/2007 Environmental BR09, wall swab
FOSC 33 (100) B8737 10/19/2007 Environmental BR09, sink swab
FOSC 33 (100) B8739 10/23/2007 Environmental BR10, sink swab
FOSC 33 (100) B8740 10/23/2007 Environmental BR11, wall swab
FOSC 33 (100) B8629 10/24/2008 Clinical HP13, blood
FOSC 33 (100) B8742 10/25/2007 Environmental BR12, sink swab
FOSC 33 (100) B8743 10/25/2007 Environmental BR12, shower swab
FOSC 33 (100) B8746 10/26/2007 Environmental BR01, water
FOSC 33 (100) B8747 10/26/2007 Environmental BR02, water
FOSC 33 (100) B8748 10/26/2007 Environmental BR02, water
FOSC 33 (100) B8630 10/30/2008 Clinical HP13, catheter tip
FOSC 33 (100) B8752 10/31/2007 Environmental BR07, water
FOSC 33 (100) B8756 7/6/2009 Environmental BR06, sink swab
FOSC 33 (100) B8758 7/6/2009 Environmental BR03, sink swab
FOSC 33 (100) B8762 7/27/2009 Environmental BR06, sink swab
FOSC 183 (100) B8751 10/31/2007 Environmental BR02, water
FIESC (98) B8709 8/7/2007 Environmental BR04, air
FIESC 15 (100) B8689 6/30/2005 Environmental BR06, air
FIESC 15 (100) B8703 1/29/2007 Environmental ICU, air (control)
FIESC 15 (100) B8704 1/29/2007 Environmental ICU, air (control)
FIESC 15 (100) B8705 6/13/2007 Environmental ICU, air (control)
FIESC 15 (99.5) B8706 6/13/2007 Environmental ICU, air (control)
FIESC 15 (100) B8753 4/30/2009 Environmental ICU, air (control)
FIESC 15 (100) B8755 4/30/2009 Environmental ICU, air (control)
FIESC 17 (100) B8708 6/18/2007 Environmental Pediatrics, air (control)
FIESC 20 (100) B8707 6/18/2007 Environmental Pediatrics, air (control)
FIESC 20 (100) B8759 7/6/2009 Environmental BR03, air
GFSC (94.1) B8627 4/18/2008 Clinical HP12, blood
GFSC (94.1) B8628 4/18/2008 Clinical HP12, blood

Species identity not determined due to multiple genetic matches.

Note: Each isolate was given a unique isolate number. Isolate sources have designations as follows: BR (bathroom), HP (hematology patient), DP (dermatology patient), followed by a source number. In many cases, more than one isolate was collected from the same source.

Abbreviations: FSSC, Fusarium solani species complex;FOSC, Fusarium oxysporum species complex; FIESC, Fusarium incarnatum equiseti species complex; GFSC, Gibberella fujikuroi species complex.

Scheel et al.

Scheel et al. BMC Infectious Diseases 2013 13:49   doi:10.1186/1471-2334-13-49

Open Data