Table 2

List of MAPMAN "BINs" showing evidence for differential expression

npq4 – wt

npq4 – oe

oe – wt

High exp in


BIN

name

elem.

p-value

p-value

p-value


1

PS

104

0.624

0.000

0.000

oePsbS


1.1

PS lightreaction

60

0.522

0.000

0.000

oePsbS


1.1.1

PS lightreaction photosystem II

26

0.205

0.002

0.381


1.1.1.2

PS lightreaction photosystem II PSII polypeptide subunits

20

0.232

0.019

0.525

oePsbS


1.1.2

PS lightreaction photosystem I

13

0.982

0.019

0.016

oePsbS


1.1.2.2

PS lightreaction photosystem I PSIpolypeptide subunits

9

0.981

0.094

0.089

oePsbS


1.3

PS calvin cyle

27

0.819

0.009

0.005

oePsbS


2

major CHO metabolism

82

0.536

0.086

0.604

npq4


3.1.2

minor CHO metabolism raffinose family raffinose synthases

4

0.439

0.089

0.465

npq4


6

gluconeogenese/glyoxylate cycle

11

0.188

0.092

0.979


16

secondary metabolism

266

0.065

0.272

0.992


17.7

hormone metabolism jasmonate

18

0.053

0.053

0.631

npq4


17.7.1

hormone metabolism jasmonate synthesis-degradation

9

0.065

0.089

0.758

npq4


19

tetrapyrrole synthesis

26

0.188

0.066

0.840

oePsbS


26.19

misc plastocyanin-like

24

0.365

0.012

0.586


29.2

protein synthesis

318

0.163

0.001

0.465

oePsbS


29.2.1

protein synthesis chloroplast/mito – plastid ribosomal protein

50

0.050

0.030

0.525

oePsbS


29.2.1.1

protein synthesis chloroplast/mito – plastid ribosomal protein plastid

24

0.229

0.010

0.378

oePsbS


29.5

protein degradation

1178

0.065

0.086

0.667


34

Transport

646

0.557

0.030

0.301

npq4


34.13

transport peptides and oligopeptides

36

0.540

0.086

0.599

npq4


35.1.5

not assigned no ontology pentatricopeptide (PPR) repeat

322

0.188

0.010

0.254

oePsbS


List of MAPMAN "BINs" showing evidence for differential expression. Only "BINs" with p-values < 0.10, after Benjamini-Hochberg-correction, in npq4 vs. wild-type, npq4 vs. oePsbS (oe) or wild-type vs. oePsbS (oe) comparisons are listed. P-values < 0.05 in bold. Classes without informative annotations (like "Not assigned") are excluded. "High exp in" shows the direction of the change; oePsbS means that the BIN had higher expression in that genotype. Number of element (elem.) is number of genes in that category.

Frenkel et al. BMC Plant Biology 2009 9:12   doi:10.1186/1471-2229-9-12

Open Data