Research article
Regulon organization of Arabidopsis
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Corresponding authors: Wieslawa I Mentzen wimentzen@gmail.com - Eve S Wurtele mash@iastate.edu
1 CRS4 Bioinformatics Laboratory, Parco Scientifico e Technologico POLARIS, 09010 Pula (CA), Italy
2 Department of Genetics, Development and Cell Biology, Iowa State University, Ames, IA 50011, USA
BMC Plant Biology 2008, 8:99 doi:10.1186/1471-2229-8-99
Published: 30 September 2008Additional files
Additional file 1:
Distribution of the numbers of groups of coexpressed neighboring genes in 100 randomized datasets. The nuclear-encoded genes were randomly reassigned to the regulons. Groups of coexpressed neighbors were counted in the same way as in the real dataset. The mean number of coexpressed groups in 100 randomized datasets was 421.4, compared to 539 in the real dataset
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Additional file 2:
Distribution of the sizes of groups of coexpressed neighboring genes in experimental and randomized data
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Additional file 3:
Functional assignments and expression profiles of the 100 genes with (A) the highest expression (maximum mean), and (B) the lowest expression (minimum mean).
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Additional file 4:
Genes with the most changing expression.
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Additional file 5:
Genes with the most steady expression.
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Additional file 6:
Genes with the highest expression.
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Additional file 7:
Genes with the lowest expression.
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Additional file 8:
Experimental metadata.
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Additional file 9:
Assignment of genes to 998 regulons.
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