Table 2

ESTs related to the ontology of nucleic acid binding.

SAM Clone

Family

Matching Arabidopsis Locusa


EX568781, EX569978

CCAAT-HAP5

At1g07980, At1g08970

EX569532

MYB-Related

At1g09770

EX569985, EX569919

TUB

At1g16070, At2g18280

EX569797, EX569977

GRAS

At1g21450, At5g66770

EX569951

AP2-EREBP

At1g28360

EX571097

NAC

At1g28470

EX570087, EX570238, EX569491

ARF

At1g30330, At4g23980, At5g20730

EX571252, EX569634, EX570163, EX569945

WRKY

At1g30650, At2g03340, At2g47260, At2g24570

EX570518, EX569818

bZIP

At1g42990, At4g34590

EX570905, EX569205, EX570291, EX568744

C2H2

At1g55110, At1g75710, At2g23740, At2g27100

EX568999, EX571110, EX570832, EX571147, EX569211, EX570070

Homeobox

At1g62360, At2g27990, At4g36870, At4g40060, At4g32980, At5g03790

EX570236

G2-like

At1g69580

EX569752, EX569559

ARID

At1g76110, At1g76510

EX571125

BHLH

At2g27230

EX568890

CCAAT-HAP3

At2g37060

EX569425

MADS

At2g45660

EX569354

C2C2-Gata

At3g06740

EX569807

SBP

At3g60030


Arabidopsis transcription factor family represented by the shoot apical meristem (SAM) unigenes. The matching Arabidopsis locus for each clone is indicated.

a. Annotation is based on the best BLASTX match against TAIR Arabidopsis protein database (Evalue < 1e-5)

Wong et al. BMC Plant Biology 2008 8:73   doi:10.1186/1471-2229-8-73

Open Data