Table 7

Plant materials used for validation and testing inter-specific/inter-generic transferability of new SSR markers

S.N.

Name of genotype

Pedigree/source

I. Elite coffee genotypes used for genetic diversity in the cultivated genepool

1

Taferikela

C. arabica; Pureline from Ethiopian collections

2

HdeT

C. arabica; Amphidiploid coffee, a natural hybrid from C. arabica and C. canephora

3

S2790

C. arabica; HdeT × Tafarikela, selection

4

S2792

C. arabica; Tafarikela × HdeT, selection

5

S10

C. arabica; Double Cross Hybrid; Caturra with Cioccie and S.795 (both arabica)

6

S11

C. arabica; Amphidiploid, C. liberica × C. eugenioides

7

BM

C. arabica; Blue Mountain Pure line

8

Agaro-Sln4

C. arabica; Pureline from Ethiopian collections

9

Kagganahalla

C. canephora; Selection

10

BR9

C. canephora; Selection

11

BR11

C. canephora; Selection

12

CXR

C. canephora; Hybrid of C. congenis × C. canephora

13

L1Valley

C. canephora; Selection

14

S3329

C. canephora; Selection

15

S3334

C. canephora; Selection

16

Sln27

C. canephora; Pure line

II. Parents and mapping population used for testing utility in mapping analysis

Parents: CXR (12) and Kagganahalla (9); Mapping population: 175 segregating progenies

III. Species of Coffea and Psilanthus (related taxa of cultivated coffee) used for transferability studies

a

C. congensis

Erythrocoffea (W. & C. Africa)

b

C. excelsa

Pachycoffea (Srilanka)

c

C. liberica

Pachycoffea (W. & C. Africa)

d

C. abeokuteae

Pachycoffea (Srilanka)

e

C. dewevrei

Pachycoffea (USDA)

f

C. arnoldiana

Pachycoffea (SanMarino)

g

C. aruwemiensis

Pachycoffea (SanMarino)

h

C. eugenioides

Mozambicoffea (C. Africa)

i

C. racemosa

Mozambicoffea (E. Africa)

j

C. salvatrix

Mozambicoffea (E. Africa)

k

C. kapakata

Mozambicoffea (C. Africa)

l

C. stenophylla

Melanocoffea (W. Africa)

m

P. wightiana

Paracoffea (India)

n

P. bengalenis

Paracoffea (India)

Hendre et al. BMC Plant Biology 2008 8:51   doi:10.1186/1471-2229-8-51