Table 4 |
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|
Expression of previously reported conserved and non-conserved miRNAs in rice. |
||||
|
miRNA |
miRNA sequence |
Frequency in the untreated library |
Frequency in the drought-stressed library |
Frequency in the salt-stressed library |
|
|
||||
|
Osa-miR156a-j |
UGACAGAAGAGAGUGAGCAC |
565 |
302 |
436 |
|
Osa-miR156k |
UGACAGAAGAGAGAGAGCACA |
9 |
0 |
9 |
|
Osa-miR156l |
CGACAGAAGAGAGUGAGCAUA |
520 |
271 |
390 |
|
Osa-miR159a, b |
UUUGGAUUGAAGGGAGCUCUG |
92 |
16 |
45 |
|
Osa-miR159c |
AUUGGAUUGAAGGGAGCUCCA |
89 |
15 |
41 |
|
Osa-miR159d |
AUUGGAUUGAAGGGAGCUCCG |
79 |
13 |
37 |
|
Osa-miR159f |
CUUGGAUUGAAGGGAGCUCUA |
90 |
16 |
41 |
|
Osa-miR159e |
AUUGGAUUGAAGGGAGCUCCU |
0 |
0 |
0 |
|
Osa-miR160a-d |
UGCCUGGCUCCCUGUAUGCCA |
71 |
43 |
71 |
|
Osa-miR160e |
UGCCUGGCUCCCUGUAUGCCG |
66 |
41 |
68 |
|
Osa-miR160f |
UGCCUGGCUCCCUGAAUGCCA |
30 |
15 |
21 |
|
Osa-miR162a |
UCGAUAAACCUCUGCAUCCAG |
6 |
0 |
1 |
|
Osa-miR162b |
UCGAUAAGCCUCUGCAUCCAG |
3 |
0 |
1 |
|
Osa-miR164a, b, f |
UGGAGAAGCAGGGCACGUGCA |
55 |
32 |
38 |
|
Osa-miR164c |
UGGAGAAGCAGGGUACGUGCA |
12 |
13 |
20 |
|
Osa-miR164d |
UGGAGAAGCAGGGCACGUGCU |
45 |
22 |
32 |
|
Osa-miR164e |
UGGAGAAGCAGGGCACGUGAG |
38 |
22 |
34 |
|
Osa-miR166a-d, f, n |
UCGGACCAGGCUUCAUUCCCC |
23 |
12 |
27 |
|
Osa-miR166e |
UCGAACCAGGCUUCAUUCCCC |
14 |
5 |
17 |
|
Osa-miR166g, h |
UCGGACCAGGCUUCAUUCCUC |
24 |
12 |
26 |
|
Osa-miR166i, j |
UCGGAUCAGGCUUCAUUCCUC |
1 |
0 |
0 |
|
Osa-miR166k, l |
UCGGACCAGGCUUCAAUCCCU |
5 |
6 |
4 |
|
Osa-miR166m |
UCGGACCAGGCUUCAUUCCCU |
24 |
13 |
27 |
|
Osa-miR167a-c |
UGAAGCUGCCAGCAUGAUCUA |
106 |
34 |
36 |
|
Osa-miR167d-j |
UGAAGCUGCCAGCAUGAUCUG |
111 |
34 |
36 |
|
Osa-miR168a |
UCGCUUGGUGCAGAUCGGGAC |
1007 |
533 |
388 |
|
Osa-miR169a |
CAGCCAAGGAUGACUUGCCGA |
916 |
230 |
283 |
|
Osa-miR169b, c |
CAGCCAAGGAUGACUUGCCGG |
916 |
230 |
285 |
|
Osa-miR169d |
UAGCCAAGGAUGAAUUGCCGG |
8 |
1 |
0 |
|
Osa-miR169e |
UAGCCAAGGAUGACUUGCCGG |
925 |
237 |
289 |
|
Osa-miR169f, g |
UAGCCAAGGAUGACUUGCCUA |
939 |
238 |
291 |
|
Osa-miR169h-m |
UAGCCAAGGAUGACUUGCCUG |
943 |
242 |
294 |
|
Osa-miR169n, o |
UAGCCAAGAAUGACUUGCCUA |
271 |
67 |
76 |
|
Osa-miR169p |
UAGCCAAGGACAAACUUGCCGG |
2 |
1 |
1 |
|
Osa-miR169q |
UAGCCAAGGAGACUGCCCAUG |
28 |
11 |
3 |
|
Osa-miR171a |
UGAUUGAGCCGCGCCAAUAUC |
16 |
4 |
7 |
|
Osa-miR171b-f |
UGAUUGAGCCGUGCCAAUAUC |
82 |
28 |
52 |
|
Osa-miR171g |
GAGGUGAGCCGAGCCAAUAUC |
1 |
1 |
0 |
|
Osa-miR171h |
GUGAGCCGAACCAAUAUCACU |
0 |
2 |
0 |
|
Osa-miR171i |
GGAUUGAGCCGCGUCAAUAUC |
8 |
0 |
2 |
|
Osa-miR172a, d |
AGAAUCUUGAUGAUGCUGCAU |
402 |
100 |
192 |
|
Osa-miR172b |
GGAAUCUUGAUGAUGCUGCAU |
377 |
94 |
179 |
|
Osa-miR172c |
UGAAUCUUGAUGAUGCUGCAC |
377 |
94 |
177 |
|
Osa-miR319a, b |
UUGGACUGAAGGGUGCUCCC |
23 |
3 |
5 |
|
Osa-miR390 |
AAGCUCAGGAGGGAUAGCGCC |
55 |
30 |
33 |
|
Osa-miR393a-b |
UCCAAAGGGAUCGCAUUGAUCU |
123 |
23 |
47 |
|
Osa-miR394 |
UUGGCAUUCUGUCCACCUCC |
1 |
1 |
2 |
|
Osa-miR395a-t |
GUGAAGUGCUUGGGGGAACUC |
1 |
0 |
2 |
|
Osa-miR395o |
AUGAAGUGUUUGGAGGAACUC |
1 |
0 |
0 |
|
Osa-miR396a-c |
UUCCACAGCUUUCUUGAACUG |
8 |
1 |
4 |
|
Osa-miR396d, e |
UCCACAGGCUUUCUUGAACUG |
20 |
5 |
8 |
|
Osa-miR397a, b |
UUAUUGAGUGCAGCGUUGAUG |
10 |
5 |
11 |
|
Osa-miR398a, b |
UGUGUUCUCAGGUCGCCCCUG |
21 |
5 |
3 |
|
Osa-miR399e-g |
UGCCAAAGGAGAUUUGCCCAG |
1 |
0 |
0 |
|
Osa-miR408 |
CUGCACUGCCUCUUCCCUGGC |
0 |
0 |
1 |
|
Osa-miR435 |
UUAUCCGGUAUUGGAGUUGA |
4 |
0 |
1 |
|
Osa-miR437 |
AAAGUUAGAGAAGUUUGACUU |
4 |
2 |
0 |
|
Osa-miR439a-j |
UGUCGAACCGCGGUUGUUCGA |
4 |
1 |
0 |
|
Osa-miR440 |
AGUGUCUCCUGAUGAUCGGGACAA |
4 |
1 |
1 |
|
Osa-miR441a-c |
UACCAUCAAUAUAAAUGUGGGAAA |
2 |
2 |
0 |
|
Osa-miR442 |
UGACGUGUAAAUUGCGAGACGAAU |
6 |
0 |
0 |
|
Osa-miR444 |
UUGCUGCCUCAAGCUUGCUGC |
3 |
0 |
1 |
|
Osa-miR445a-i |
UAAAUUAGUGUAUAAACAUCCGAU |
4 |
0 |
0 |
|
Osa-miR446 |
CAUCAAUAUGAAUAUGGGAAAUGG |
2 |
2 |
3 |
|
Osa-miR528 |
UGGAAGGGGCAUGCAGAGGAG |
0 |
0 |
1 |
|
Osa-miR529 |
CUGUACCCUCUCUCUUCUUC |
1 |
1 |
1 |
|
Osa-miR530 |
AGGUGCAGAGGCAGAUGCAAC |
22 |
6 |
1 |
|
Osa-miR531 |
CUCGCCGGGGCUGCGUGCCGCCAU |
3 |
1 |
4 |
|
Osa-miR535 |
UGACAACGAGAGAGAGCACGC |
10 |
7 |
36 |
|
Osa-miR806a-h |
AUGUGCUAAAAAGUCAACGGUG |
19 |
3 |
9 |
|
Osa-miR808 |
AUGAAUGUGGGAAAUGUAAGAA |
3 |
1 |
0 |
|
Osa-miR809a-h |
UGAAUGUGAGAAAUGUUAGAAU |
7 |
4 |
1 |
|
Osa-miR811a-c |
ACCGUUAGAUCGAGAAAUGGACGU |
4 |
1 |
0 |
|
Osa-miR812a-e |
GACGGACGGUUAAACGUUGGAC |
3 |
1 |
2 |
|
Osa-miR813 |
GGGUUAUGGAAUGGGUUUUACC |
3 |
3 |
1 |
|
Osa-miR814a-c |
CACUUCAUAGUACAACGAAUCU |
0 |
2 |
1 |
|
Osa-miR815a-c |
AAGGGGAUUGAGGAGAUUGGG |
2 |
2 |
0 |
|
Osa-miR816 |
GUGACAUAUUUUACUACAAC |
0 |
0 |
0 |
|
Osa-miR817 |
UCCAACUUGAGGCCCGAUUGA |
0 |
0 |
0 |
|
Osa-miR818a-e |
AAUCCCUUAUAUUAUGGGACGG |
21 |
5 |
3 |
|
Osa-miR819a-k |
UCAGGUUAUAAGACUUUCUAGC |
1 |
2 |
0 |
|
Osa-miR820a-c |
CGGCCUCGUGGAUGGACCAGG |
55 |
17 |
26 |
|
|
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|
Sunkar et al. BMC Plant Biology 2008 8:25 doi:10.1186/1471-2229-8-25 |
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