|
Cis-element candidate motifs from Aux/IAA genes and suggested to be auxin-induction related according to ATCIS. |
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| Motif |
Hit TU in target group*1 |
Hit TU in whole*2 |
Lift |
ATCIS Description |
|
|
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| ACACAC |
10 |
6056 |
1.353 |
PRHA BS in PAL1*3 |
| ATACACA |
5 |
2124 |
1.929 |
PRHA BS in PAL1 |
| ATACACAC |
3 |
739 |
3.326 |
PRHA BS in PAL1 |
| TACACAC |
4 |
1786 |
1.835 |
PRHA BS in PAL1 |
| CATGTCTC |
1 |
303 |
2.704 |
- |
| GTGTCTC |
1 |
722 |
1.135 |
- |
| TGTCTCCG |
1 |
178 |
4.603 |
- |
| TGTCTCTG |
2 |
263 |
6.231 |
- |
|
*1 The number of TU possessing the designated motif within 28 TUs of the target gene list. *2 The number of TU possessing the designated motif within 22943 TUs stored in KOME database. *3 PRHA = Developmental and auxin-induced expression of the Arabidopsis prha homeobox gene. | ||||
Doi et al. BMC Plant Biology 2008 8:20 doi:10.1186/1471-2229-8-20 |
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