Table 3

Functional classification of 3006 Mesostigma viride contigs using the KOG system [43] and an expectation threshold of e = 10-7.

Functional Category

No. of Contigs


INFORMATION STORAGE AND PROCESSING

236

[J] Translation, ribosomal structure and biogenesis

168

[A] RNA processing and modification

28

[K] Transcription

26

[L] Replication, recombination and repair

9

[B] Chromatin structure and dynamics

5

CELLULAR PROCESSES AND SIGNALING

209

[D] Cell cycle control, cell division, chromosome partitioning

7

[Y] Nuclear structure

0

[V] Defense mechanisms

2

[T] Signal transduction mechanisms

31

[M] Cell wall/membrane/envelope biogenesis

9

[N + Z] Cytoskeleton and cell motility

18

[W] Extracellular structures

0

[U] Intracellular trafficking, secretion, and vesicular transport

41

[O] Posttranslational modification, protein turnover, chaperones

101

METABOLISM

212

[C] Energy production and conversion

87

[G] Carbohydrate transport and metabolism

35

[E] Amino acid transport and metabolism

24

[F] Nucleotide transport and metabolism

9

[H] Coenzyme transport and metabolism

13

[I] Lipid transport and metabolism

21

[P] Inorganic ion transport and metabolism

16

[Q] Secondary metabolites biosynthesis, transport and catabolism

7

POORLY CHARACTERIZED

158

[R] General function prediction only

55

[S] Function unknown

37

[X] Unnamed protein

66

Unknown

2191


Simon et al. BMC Plant Biology 2006 6:2   doi:10.1186/1471-2229-6-2

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