Table 6

Putative orthologs in peach of Arabidopsis genes involved in chromatin modification and flowering located in QTL regions, identified by reciprocal blast analysis
Complex or pathway Arabidopsis protein Gene model Putative peach ortholog Blastp E-value Genomic location QTL region
Polycomb (PRC2) CLF At2g23380 ppa001213m 0 scaffold_7: 15427185 - 15434449 7b
VIL2 At4g30200 ppa001943m 6×10-177 scaffold_1: 5841849 - 5849018 1a
Polycomb (PRC1) EMF1 At5g11530 ppa000318m 2×10-32 scaffold_1: 37002560 - 37008224 1b
Trithorax PKL At2g25170 ppa000228m 0 scaffold_1: 33913537 - 33925777 1b
ASH2R At1g51450 ppa006686m 2×10-131 scaffold_4: 19402413 - 19406234 4c
JMJ domain REF6 At3g48430 ppa000214m 0 scaffold_5: 14087553 - 14096069 5b
Histone acetylation HAC1 At1g79000 ppa000162m 0 scaffold_3: 1240769 - 1249807 3a
HAM2 At5g09740 ppa005747m 0 scaffold_1: 40838319 - 40843052 1b
HDA6 At5g63110 ppa005308m 0 scaffold_5: 14461481 - 14464755 5b
Flowering SVP At2g22540 ppa011063m 8×10-82 scaffold_6: 18701564 - 18704722 6c
LFY At5g61850 ppa006372m 9×10-87 scaffold_5: 13116676 - 13119151 5b
TFL1 At5g03840 ppa012369m 1×10-73 scaffold_7: 14280983 - 14282266 7b

Romeu et al.

Romeu et al. BMC Plant Biology 2014 14:52   doi:10.1186/1471-2229-14-52

Open Data