Table 4

Quantitative trait loci (QTLs) detected in the ‘V6’ x ‘Granada’ progeny
Variable Location/year Map LG Position (cM) Nearest marker CI (cM) LOD R2 (%) Additive effect
CRW AA V6 1 72.5 SNP_IGA_122057 68.2-74.5 16.3 69 -206.6
EJ V6 1 73.5 SNP_IGA_122057 68.2-74.5 22.3 64 -228.8
EJ V6 3 10.4 SNP_IGA_297497 8.9-14.4 3.8 10 -123.2
EJ G 7 29.9 SNP_IGA_769194 29.3-40.5 3.9 20 -159.7
AA G 7 45.5 SNP_IGA_779224 41.3-48.9 3.9 24 -120.1
CRU AA V6 1 72.5 SNP_IGA_122057 66.8-74.5 16.3 76 -284.2
EJ V6 1 73.5 SNP_IGA_122057 69.3-74.5 22.1 72 -248.1
EJ G 6 34.2 SNP_IGA_635355 23.6-37.1 3.8 18 -143.8
EJ G 7 29.9 SNP_IGA_769194 29.3-41.3 3.7 18 -158.5
EJ G 7 45.5 SNP_IGA_779224 43.2-48.9 4.5 21 -151.2
AA G 7 45.5 SNP_IGA_779224 41.3-48.9 3.9 25 -158.5
CRD AA V6 1 72.5 SNP_IGA_122057 66.8-74.5 17.3 65 -14.1
EJ V6 1 73.5 SNP_IGA_122057 68.4-74.5 22.1 67 -13.9
EJ V6 3 2.9 SNP_IGA_293752 0.0-15.6 2.5 6 -4.2
EJ G 6 34.2 SNP_IGA_635355 23.3-41.6 2.8 13 -7.1
AA G 7 45.5 SNP_IGA_779224 41.7-48.9 4.0 25 -8.4
EJ G 7 45.5 SNP_IGA_779224 41.3-48.9 3.2 14 -6.5
EnD AA V6 1 72.5 SNP_IGA_122057 66.8-74.5 17.0 64 -26.6
EJ V6 1 73.5 SNP_IGA_122057 67.8-74.5 20.2 63 -22.2
EJ G 6 34.2 SNP_IGA_635355 23.4-41.6 3.0 14 -11.9
AA G 7 45.5 SNP_IGA_779224 41.9-48.9 3.9 25 -12.4
EJ G 7 45.5 SNP_IGA_779224 41.3-48.9 3.5 16 -11.2
EcD AA V6 1 74.5 SNP_IGA_122057 72.5-74.5 15.9 65 -13.4
EJ V6 1 73.5 SNP_IGA_122057 67.4-74.5 20.2 63 -19.2
AA V6 4 2.8 SNP_IGA_381379 0.0-12.8 2.8 8 -8.1
AA G 7 45.5 SNP_IGA_779224 43.3-48.9 5.2 30 -15.3
BD AA V6 1 72.5 SNP_IGA_122057 65.8-74.5 16.8 60 -22.4
EJ V6 1 72.5 SNP_IGA_122057 67.2-73.5 19.9 60 -12.9
EJ V6 3 17.8 SNP_IGA_298293 15.2-18.8 5.2 16 -9.6
EJ V6 3 33.1 SNP_IGA_316315 32.5-41.9 3.9 11 8.1
AA V6 6 43.2 SNP_IGA_664540 42.2-47.7 5.1 17 -11.6
AA G 7 29.9 SNP_IGA_769194 29.3-41.3 2.6 19 -8.8
EJ G 7 29.9 SNP_IGA_769194 29.3-41.3 3.7 22 -9.8
AA G 7 45.5 SNP_IGA_779224 43.4-48.9 4.5 29 -9.5
EJ G 7 45.5 SNP_IGA_779224 41.3-48.9 3.6 20 -8.3
HREc AA V6 1 73.5 SNP_IGA_122057 63.1-74.5 3.0 15 -497.2
EJ V6 1 74.5 SNP_IGA_132237 63.7-74.5 5.4 25 -644.8
AA V6 3 12.4 SNP_IGA_297497 0.0-16.7 2.5 15 -253.7
EJ G 5 20.4 SNP_IGA_591439 2.8-32.5 3.0 17 432.3
HRB AA V6 6 50.6 SNP_IGA_679852 49.7-54.1 5.6 32 457.9
EJ G 4 11.4 SNP_IGA_513496 0.0-20.6 2.7 12 584.2
PEnEc EJ V6 1 14.3 SNP_IGA_7895 2.8-19.3 2.8 15 -5.9
EJ G 5 15.4 SNP_IGA_591439 9.8-34.1 2.7 14 -5.0
PEnB AA V6 1 73.5 SNP_IGA_122057 65.8-74.5 8.8 39 8.6
EJ V6 1 73.5 SNP_IGA_122057 63.7-74.5 8.3 33 9.0
AA V6 5 9.5 SNP_IGA_556166 0.0-16.2 2.9 12 4.8
EJ G 6 34.2 SNP_IGA_635355 23.5-37.1 4.3 18 6.5
EJ G 7 45.5 SNP_IGA_779224 41.3-48.9 2.6 9 4.9
HD AA/2012 V6 1 70.8 SNP_IGA_107581 63.6-73.5 7.8 16 -16.1
EJ/2012 V6 1 73.5 SNP_IGA_122057 65.6-74.5 7.8 15 -10.9
AA/2012 V6 4 52.9 SNP_IGA_411147 50.5-56.9 20.1 51 -27.9
EJ/2011 V6 4 52.9 SNP_IGA_411147 50.5-57.0 16.2 49 -19.4
EJ/2012 V6 4 53.9 SNP_IGA_411147 52.9-56.8 21.1 54 -20.5
AA/2012 V6 6 11.1 SNP_IGA_620767 0.0-20.9 2.8 6 10.0
EJ/2011 V6 6 11.0 SNP_IGA_620767 0.0-23.9 3.4 8 7.7
EJ/2012 V6 6 11.1 SNP_IGA_620767 1.0-19.9 5.4 10 8.9
AA/2012 V6 7 4.0 SNP_IGA_713270 0.0-17.8 4.0 9 11.7

LG, linkage group; CI, two-LOD confidence interval of QTL position; LOD, logarithm of the odds; R2, percentage of the phenotypic variance explained by the QTL.

Romeu et al.

Romeu et al. BMC Plant Biology 2014 14:52   doi:10.1186/1471-2229-14-52

Open Data