Table 1

Summary of confirmatory PCR assays
Gene AGI ID LBFCa FC - qPCRb RT-PCRc
Ubiquitin-conjugating enzyme 20 At1g50490 +2.44 +7.0
Proline transporter 1 At2g39890 +2.02 +2.0
Zinc finger (C3HC4-type RING finger) family protein At5g60250 +1.96 +4.0
Sucrose phosphate synthase 2 F At5g11110 +1.70 +1.5
Expansin B5 At3g60570 +1.50 +2.0
CML42 At4g20780 +1.48 +4.5
Plant cadmium resistance 11 At1g68610 -1.99 -2.0
Cellulase 3 At1g71380 -1.98 -1.4
Phosphoinositide 4-kinase gamma 4 At2g46500 -1.75 -2.2
Heat shock protein 17.6A At1g53540 -1.34 -2.2
CAP (Pathogenesis-related protein, putative) At2g19970 +23.34 +
C2 domain-containing protein At3g57880 +16.93 +
F-box family protein At1g65760 +11.8 +
Beta glucosidase 36 At1g51490 +4.95 +
CAP (allergen V5) At2g19980 +4.79 +
Hypothetical protein At2g22340 -141.79 -
Pentatricopeptide (PPR) At5g28380 -44.55 -
Avirulence-responsive family protein At4g09950 -25.77 -
DET3 At1g12840 -12.71 -

a Lower bound of fold change (microarray experiment).

bagp6 agp11 to wild-type fold change for qPCR experiments.

c Genes up- or down-regulated in agp6 agp11, as assessed by semi-quantitative RT-PCR are indicated with a (+) or a (−) sign, respectively.

Costa et al.

Costa et al. BMC Plant Biology 2013 13:7   doi:10.1186/1471-2229-13-7

Open Data