Table 1

Summary of observed and predicted copy numbers of the BRAMI-1 elements in Brassica relatives
MITE BRAMI-1 ATTIRTA-1
B. oleracea B. rapa B. napus A. thaliana
Database type GSS Pseudo-chromosomes GSS Whole genome
Database size 470 Mb 256 Mb 15 Mb 119 Mb
Total copies 399 697 11 70
(>80% similarity) 123 401 4 34
Average length of the GSS sequence 700 bp N/A 700 bp N/A
Estimated Genome Size [30] 696 Mb 529 Mb 1132 Mb 157 Mb
Estimated copies in the whole genome 1464 1440 2490 44

BLASTn was performed at the local database (http://imcrop.snu.ac.kr webcite).

N/A: not applicable.

Sampath et al.

Sampath et al. BMC Plant Biology 2013 13:56   doi:10.1186/1471-2229-13-56

Open Data