Table 3

Genes up-regulated in the tomato pedicel distal region (Dis) compared with the proximal region (Prox)
Dis > Prox Dis > AZ
Tomato gene ID Probe ID Gene name / EST accession number Arabidopsis homologue Annotation Fold change (log2) p-value Fold change (log2) p-value
Transcription factor
Solyc02g089200a A_96_P195359 TM29 BG734619 AT5G15800 SEP1 (SEPALLATA1) 8.8 0.004 2.4 < 0.001
Solyc05g015750a A_96_P000181 TDR5 AY294330 AT1G24260 SEP3 (SEPALLATA3) 7.4 0.018 4.6 < 0.001
Solyc07g006880 A_96_P040576 AK326074 AT5G57520 ZFP2 (ZINC FINGER PROTEIN 2) 7.0 0.006 3.0 <0.001
Solyc01g093960a A_96_P204169 BI203609 AT2G45650 AGL6 (AGAMOUS-LIKE 6) 6.5 0.005 0.4 0.041
Solyc06g073920a A_96_P249912 AK328263 AT1G08465 YAB2 (YABBY2) 5.6 < 0.001 1.2 0.013
Solyc02g085630 A_96_P039876 AI898032 AT4G36740 ATHB40 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40) 5.5 0.023 0.6 0.059
Solyc02g086690 A_96_P163816 AW737355 AT5G40350 MYB24 (myb domain protein 24) 5.1 < 0.001 1.5 0.009
Solyc12g038510a A_96_P114197 SlMBP21 TA53678_4081 AT5G15800 SEP1 (SEPALLATA1) 5.0 0.001 0.2 0.051
Solyc12g100150 A_96_P191189 AK328730 AT1G31320 LBD4 (LOB DOMAIN-CONTAINING PROTEIN 4) 4.8 0.001 1.1 0.028
Solyc01g106250 A_96_P113847 TA53587_4081 AT5G60142 DNA binding 4.6 0.010 1.2 0.024
Solyc02g085910 A_96_P050501 AK328874 AT3G02550 LBD41 (LOB DOMAIN-CONTAINING PROTEIN 41) 4.3 0.006 0.8 0.127
Solyc04g079360 A_96_P185909 BG126724 AT3G50060 MYB77 (myb domain protein 77) 4.2 0.008 1.8 0.005
Solyc04g081000a A_96_P206659 TAP3 DQ674532 AT3G54340 AP3 (APETALA 3) 4.1 0.004 1.2 0.017
Solyc07g008020 A_96_P212749 AK319758 AT4G32280 IAA29 (INDOLE-3-ACETIC ACID INDUCIBLE 29) 4.0 0.005 1.8 0.076
Solyc03g044300 A_96_P172149 SlAP2a AK326004 AT4G36920 AP2 (APETALA 2) 3.8 0.007 2.0 0.022
Solyc07g066330 A_96_P252807 TC202847 AT1G56010 ANAC022 | NAC1 3.4 0.012 0.1 0.494
Solyc07g063410 A_96_P046081 AK323372 AT4G27410 ANAC072 | RD26 (RESPONSIVE TO DESICCATION 26) 3.3 0.018 0.9 0.101
Phytohormone-related function
Solyc02g064690a A_96_P209009 BP875651 AT4G37580 HLS1 (HOOKLESS 1) 4.8 0.003 2.4 0.001
Solyc02g092490 A_96_P079464 AK247718 AT4G37580 HLS1 (HOOKLESS 1) 3.6 0.019 1.2 0.101
Solyc01g107400 A_96_P042196 BW692346 AT2G14960 GH3.1 4.0 0.035 1.7 0.008
Solyc07g026650 A_96_P020931 SlACO5 AJ715790 AT2G19590 ACO1 (ACC OXIDASE 1) 4.4 0.020 0.2 0.553
Solyc10g017990 A_96_P028296 BG130984 AT5G56970 CKX3 (CYTOKININ OXIDASE 3) 4.3 0.026 −1.5 0.291
Solyc12g008900 A_96_P107909 TA49618_4081 AT5G56970 CKX3 (CYTOKININ OXIDASE 3) 4.3 0.017 −1.5 0.296

If more than two probes derived from the same gene were selected, only the result of the probe indicating the highest fold change value was shown in this table. Each assay result is shown in Additional file 6. Genes examined by RT-PCR are marked with lower case “a”.

Nakano et al.

Nakano et al. BMC Plant Biology 2013 13:40   doi:10.1186/1471-2229-13-40

Open Data