Table 2

Genes preferentially expressed in a tomato pedicel proximal region (Prox) compared with the distal region (Dis)
Prox > Dis Prox > AZ
Tomato gene ID Probe ID Gene name / EST accession number Arabidopsis homologue Annotation Fold change (log2) p-value Fold change (log2) p-value
Transcription factor
Solyc12g009580a A_96_P138787 AI782101 AT2G26580 YAB5 (YABBY5) 5.0 0.015 3.2 0.074
Solyc01g096070 A_96_P108377 TA50096_4081 AT4G23980 ARF9 (AUXIN RESPONSE FACTOR 9) 3.4 0.005 0.3 0.059
Solyc08g076820 A_96_P101994 AK323669 AT5G46690 bHLH071 (basic-helix-loop-helixHLH protein 71) 3.4 0.002 1.5 0.003
Solyc06g005310 A_96_P124087 TA56053_4081 AT3G46130 MYB111 (MYB DOMAIN PROTEIN 111) 3.6 0.036 2.5 0.007
Solyc12g056460a A_96_P182539 SlMBP14 BF098196 AT2G45660 SOC1 | AGL20 (AGAMOUS-LIKE 20) 3.7 0.018 2.0 0.069
Solyc06g065820a A_96_P012741 SlERF1 AY077626 AT5G25190 ethylene-responsive element-binding protein, putative 3.7 0.006 1.4 0.007
Phytohormone-related function
Solyc08g014000a A_96_P012631 LOXA U09026 AT1G55020 LOX1 3.6 0.008 −0.8 0.365
Solyc11g011210 A_96_P190874 RSI-1 AK324086 AT3G02885 GASA5 (GAST1 PROTEIN HOMOLOG 5) 4.2 0.019 −0.7 0.014

If more than two probes derived from the same gene were selected, only the result of the probe indicating the highest fold change value was shown in this table. Each assay result is shown in Additional file 5. Genes examined by RT-PCR are marked with lower case “a”.

Nakano et al.

Nakano et al. BMC Plant Biology 2013 13:40   doi:10.1186/1471-2229-13-40

Open Data