Table 5

The most abundant SNPs with differential representation in the transcriptomes of the resistant (R) and susceptible (S) branches of Eucalyptus melliodora
Contig - position R allele S allele BLAST Hit
contig 12190 - 233 G/G (28/-) G/A (25/6) methyl cpg binding domain 10
contig 5065 - 502 T/C (18/16) T/T (2/-) peptidase m1 family protein
contig 5021 - 317 G/G (10/-) G/A (17/4) histone deacetylase complex subunit sap18
contig 5063 - 668 T/G (11/8) T/T (11/-) pyruvate kinase
contig 7410 - 589 G/A (15/3) G/G (12/-) ycf20-like protein
contig 11898 - 31 A/G (15/3) A/A (12/-) protein
contig 12260 - 395 C/A (13/2) C/C (6/-) -
contig 4834 - 463 C/C (3/-) C/T (13/2) -
contig 7446 - 648 G/A (9/7) G/G (2/-) protein transport protein sec 13
contig 7510 - 46 G/G (4/-) G/A (11/3) -

Contig – position shows the contig number and the nucleotide position that is variable. In both the R allele and S allele columns, the variable nucleotides are written first followed by the number of reads at that position for each variant respectively. BLAST Hit shows the best BLAST Hit for each contig (found using Blast2GO [19]) and – represents contigs that had no best BLAST Hit.

Padovan et al.

Padovan et al. BMC Plant Biology 2013 13:29   doi:10.1186/1471-2229-13-29

Open Data