Table 3

Statistical analysis (Fisher’s exact test) of the over or under representation of GO categories in the overR (ii) data set derived from the transcriptome of leaves from resistant branches of a mosaic Eucalyptus melliodora tree
GO Term Name Type FDR p-Value Over/Under
GO:0003824 catalytic activity F 0.45 0.00 +
GO:0007049 cell cycle P 0.56 0.02 +
GO:0005198 structural molecule activity F 0.56 0.02 -
GO:0005840 ribosome C 0.56 0.04 -
GO:0030529 ribonucleoprotein complex C 0.56 0.04 -
GO:0000166 nucleotide binding F 0.56 0.04 -
GO:0005216 ion channel activity F 0.56 0.04 +
GO:0015075 ion transmembrane transporter activity F 0.56 0.04 +
GO:0015267 channel activity F 0.56 0.04 +
GO:0022803 passive transmembrane transporter activity F 0.56 0.04 +
GO:0022838 substrate-specific channel activity F 0.56 0.04 +
GO:0022857 transmembrane transporter activity F 0.56 0.04 +
GO:0022891 substrate-specific transmembrane transporter activity F 0.56 0.04 +
GO:0022892 substrate-specific transporter activity F 0.56 0.04 +
GO:0005975 carbohydrate metabolic process P 0.56 0.04 +

Type refers to the GO category type: F = molecular function, P = biological processes and C = cellular component. FDR refers to the false discovery rate (FDR)- corrected p-value. p-Value refers to single test p-value. In the over/under column, + signifies over-represented categories and – signifies under-represented categories when compared to the reference data set (i).

Padovan et al.

Padovan et al. BMC Plant Biology 2013 13:29   doi:10.1186/1471-2229-13-29

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