Table 1

Sequencing statistics generated by de novo assembly for the reads generated by sequencing the mRNA pool of leaves from the resistant and susceptible branches of a mosaic Eucalyptus melliodora
Counts Mean length Total bases
de novo assembly (i) total reads 277 725 296 82 179 685
mapped reads 243 470 290 70 654 843
unmapped reads 34 255 336 11 524 842
contigs 13 104 599 7 853 262
R mapped to de novo (ii) total reads 133 574 320 42 788 130
mapped reads 114 093 316 36 061 899
unmapped reads 19 481 345 6 726 231
contigs 11 965 615 7 367 368
S mapped to de novo (iii) total reads 144 151 273 39 391 555
mapped reads 130 008 267 34 767 476
unmapped reads 14 143 327 4 624 079
contigs 10 130 626 6 350 291

(i) contains all reads from this library, (ii) contains all reads over-represented in the resistant branch compared with the susceptible branch and (iii) contains all reads over-represented in the susceptible branch compared with the resistant branch.

Padovan et al.

Padovan et al. BMC Plant Biology 2013 13:29   doi:10.1186/1471-2229-13-29

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