Table 6

Twenty most differentially expressed genes with higher expression in OLD stage relative to CSS stage
Accession Gene annotation1 CSS/OLD Fold-change2 q-value3
AT1G21310 EXTENSIN 3 (ATEXT3) −3.9 4.8E-02
AT5G09840 unknown protein −4.1 3.7E-02
AT3G54580 proline-rich extensin-like family protein, structural constituent of cell wall −5.0 4.8E-02
AT5G54230 MYB DOMAIN PROTEIN 49 (MYB49) −5.0 4.1E-02
AT2G28780 unknown protein −5.0 2.9E-02
AT1G70830 Bet v I allergen family −5.2 3.9E-02
AT2G02930 GLUTATHIONE S-TRANSFERASE F3 (ATGSTF3) −5.4 3.0E-02
AT4G15390 acyl-transferase family protein −6.1 1.6E-02
AT4G08780 peroxidase, putative −8.2 4.5E-02
AT1G02930 GLUTATHIONE S-TRANSFERASE 6 (GSTF6) −8.6 4.3E-02
AT2G36120 DEFECTIVELY ORGANIZED TRIBUTARIES 1 (DOT1) −8.8 3.5E-02
AT1G19530 unknown protein −9.7 3.1E-02
AT1G75830 LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 67 (LCR67) −9.9 1.5E-02
AT2G26020 PLANT DEFENSIN 1.2B (PDF1.2b) −10.7 4.3E-02
AT5G22490 Wax ester synthase homologue −11.5 4.5E-02
AT5G44420 PLANT DEFENSIN 1.2 (PDF1.2) −13.1 3.9E-02
AT2G26010 PLANT DEFENSIN 1.3 (PDF1.3) −16.2 4.4E-02
AT4G16260 O-glycosyl hydrolase −17.9 4.9E-02
AT5G44430 PLANT DEFENSIN 1.2C (PDF1.2c) −19.9 3.6E-02
AT3G56700 FATTY ACID REDUCTASE 6 (FAR6) −55.4 7.8E-03

1Gene descriptions are abbreviated from TAIR10 genome release. Putative functions are stated in lowercase.

2Genes ranked according to fold-change values derived from log2 ratios of CSS (numerator) and OLD (denominator).

3 Derived from false discovery-rate correction of p-values.

Hall and Ellis

Hall and Ellis BMC Plant Biology 2013 13:14   doi:10.1186/1471-2229-13-14

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