Table 4

Twenty most differentially expressed genes with higher expression in CSS stage relative to MGR stage
Accession Gene annotation1 MGR/CSS Fold-change2 q-value3
AT5G25110 CBL-INTERACTING PROTEIN KINASE 25 (CIPK25)(SnRK3.25) −5.1 1.8E-02
AT2G43050 pectin methylesterase −5.5 2.8E-03
AT4G30290 XYLOGLUCAN ENDOTRANSGLUCOSYLASE (XTH19) −5.5 2.8E-04
AT5G59290 UDP-glucuronic acid decarboxylase 3 (UXS3) −5.6 5.8E-04
AT2G38080 LACCASE 4 (IRX12) −6.0 4.1E-04
AT2G37090 IRREGULAR XYLEM 9 (IRX9) −6.1 4.3E-04
AT5G46340 REDUCED WALL ACETYLATION 1 (RWA1) −6.1 3.0E-03
AT1G03740 S/T protein kinase −6.1 7.8E-06
AT5G01360 TRICHOME BIREFRINGENCE-LIKE 3 (TBL3) −6.9 2.3E-03
AT2G28315 Nucleotide/sugar transporter family protein −7.3 4.0E-03
AT1G22480 plastocyanin-like domain-containing protein −7.8 3.6E-04
AT5G17420 CESA7(IRX3) −8.8 1.6E-04
AT3G18660 glucuronic acid substitution of xylan1 (GUX1) −9.0 5.7E-04
AT4G18780 CESA8 (IRX1) −9.5 9.4E-04
AT3G16920 CHITINASE-LIKE PROTEIN 2 (CTL2) −10.1 1.3E-05
AT2G28110 FRAGILE FIBER 8 (FRA8) −10.3 4.8E-04
AT2G03200 aspartyl protease family protein −10.4 9.6E-05
AT1G63910 AtMYB103 −11.5 2.3E-03
AT5G44030 CESA4 (IRX5) −11.5 5.6E-05
AT2G45220 pectin methylesterase −38.4 1.8E-05

1Gene descriptions are abbreviated from TAIR10 genome release. Putative functions are stated in lowercase.

2Genes ranked according to fold-change values derived from log2 ratios of MGR (numerator) and CSS (denominator).

3 Derived from false discovery-rate correction of p-values.

Hall and Ellis

Hall and Ellis BMC Plant Biology 2013 13:14   doi:10.1186/1471-2229-13-14

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