Open Access Highly Accessed Software

P-TRAP: a Panicle Trait Phenotyping tool

Faroq AL-Tam1, Helene Adam2*, António dos Anjos45, Mathias Lorieux23, Pierre Larmande2, Alain Ghesquière2, Stefan Jouannic2 and Hamid Reza Shahbazkia1*

Author Affiliations

1 DEEI-FCT Universidade do Algarve, 8005-139 Faro, Portugal

2 IRD, UMR DIADE, Genome and Development of Rice group, 911 Avenue Agropolis, 34394 Montpellier, France

3 CIAT, Agrobiodiversity and Biotechnology Project, Cali, Colombia

4 DCT, ISMAT - Instituto Superior Manuel Teixeira Gomes, 8500-508 Portimão, Portugal

5 CCMAR-CIMAR Laboratório Associado Universidade do Algarve, 8005-139 Faro, Portugal

For all author emails, please log on.

BMC Plant Biology 2013, 13:122  doi:10.1186/1471-2229-13-122

Published: 29 August 2013

Additional files

Additional file 1:

Skeleton conversion to mathematical graph. The technical description of the algorithm for converting the skeleton into a graph.

Format: ZIP Size: 95KB Download file

Open Data

Additional file 2:

User manual of P-TRAP. The description of the software and a set of examples of how the user can install and use the application.

Format: PDF Size: 1.4MB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 3:

26 images of spread out panicles. A set of images of spread out panicles used to test the application for the detection of the structure, counting the grains or spikelets and for the detection of grain traits.

Format: ZIP Size: 2.9MB Download file

Open Data

Additional file 4:

21 images of spread out seeds. A set of images of spread out grains used to test the application for the detection of grain traits.

Format: ZIP Size: 817KB Download file

Open Data

Additional file 5:

Example of overlapping grains. Samples with extremely overlapped grains.

Format: PDF Size: 39KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 6:

Sample images processed by P-TRAP and by other approaches. Several different images processed by P-TRAP and by other approaches.

Format: PDF Size: 2.6MB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 7:

P-TRAP source code. The Netbeans project that contains the source code of the application.

Format: ZIP Size: 9.7MB Download file

Open Data

Additional file 8:

Test data for the P-TRAP software. A complete P-TRAP project, can be used in the application for tests.

Format: ZIP Size: 235KB Download file

Open Data