Table 5

Summary of the gene-ontology analyses of the biological functions and molecular processes related to the miRNA target genes
miRNA Total targets Individual targets GO biological processes GO molecular functions
oeu_miR156 a/b/c/d/e/f/g/h/i/j/k 306 50 Biological regulation, metabolic process, cellular process, signal transduction, response to stimulus, response to stress, organismal development, transport, localization, reproductive developmental process and phyllome development. Binding, oxidoreductase activity, kinase activity, transferase activity, catalytic activity, phosphatase regulator activity and enzyme regulator activity.
oeu_miR159 a/b/c/d 65 19 Organismal development, reproductive developmental process, biological regulation, developmental process, cellular response to hormone stimulus, metabolic process, biological regulation and transcription. Binding, oxidoreductase activity, catalytic activity, hydrolase activity and ligase activity.
oeu_miR160 a/b/c/d/e/f/g 45 10 biological regulation, metabolic process, transcription, response to stimulus, organismal development and reproductive development. Binding.
oeu_miR164 a/b/c/d/e/f 46 12 Biological regulation, metabolic process, transcription, response to stimulus, organismal development, reproductive developmental process, transport, localization and phyllome development. Binding, oxidoreductase activity, kinase activity, transferase activity, catalytic activity and hydrolase activity.
oeu_miR166 a/b/c/d/e/f/g/h/i/j/k/l/m/n/o/p/q 159 16 Organismal development, reproductive developmental process, metabolic process, biological regulation. Binding, transporter activity, oxidoreductase activity, protease activity, peptidase activity, catalytic activity and hydrolase activity.
oeu_miR167 a/b/c/d/e/f/g 83 25 Organismal development, biological regulation and metabolic process. Binding, oxidoreductase activity, catalytic activity, kinase activity, transferase activity, phosphatase activity, hydrolase activity and unannotated.
oeu_miR168 a/b 14 7 Organismal development and biological regulation. Binding.
oeu_miR169 a/b/c/d/e/f/g/h/i/j/k/l/m/r/s/v/w 84 18 Transport and localization. Binding and transporter activity.
oeu_miR171 a/b/c/d/e/f/g/h/i 96 24 Organismal development, metabolic process and gene expression. Binding, oxidoreductase activity, catalytic activity and transporter activity.
oeu_miR172 a/b/c/d/e/f/g/h/i 153 30 Organismal development, reproductive developmental process, metabolic process, transport, localization, biological regulation and transcription. Binding, oxidoreductase activity, signal transducer activity, hydrolase, transporter activity and protein kinase activity.
oeu_miR319 a/b/c/d/e/f/g/h 128 22 Organismal development, reproductive developmental process and transcription. Binding.
oeu_miR390 a/b/c/d 84 21 Biological regulation, metabolic process, organismal development and inorganic anion transport. Binding, oxidoreductase activity, phosphotransferase activity and protein kinase activity.
oeu_miR393 a/b 12 12 Organismal development, reproductive developmental process, flower development, metabolic process, response to stimulus, response to stress, transport and localization. Binding, phosphotransferase activity and protein kinase activity.
oeu_miR394 a/b 30 15
oeu_miR395 b/c/d/e/f/g/h/i/j 72 8 Metabolic process, response to chemical stimulus and ion transport. Binding, catalytic activity, transporter activity and adenylyltransferase activity.
oeu_miR396 a/b/c/d/e/f 98 34 Biological regulation, negative regulation of molecular function, metabolic process, organismal development, reproductive developmental process and flower development. Binding, catalytic activity, hydrolase activity and methyltransferase activity.
oeu_miR397 a/b 59 35 Organismal development, reproductive developmental process, lignin metabolic process and biological regulation. <−−missing something at the end?? Binding, oxidoreductase activity and signal transducer activity.
oeu_miR399 b/c/f/g/i 18 7 Transport and localization. Transporter activity.
oeu_miR408 13 13 Lignin metabolic process, unannotated and biological regulation. Binding, oxidoreductase activity and transferase activity.
oeu_miR530 a 39 39

Yanik et al.

Yanik et al. BMC Plant Biology 2013 13:10   doi:10.1186/1471-2229-13-10

Open Data