Table 1

Raw and clean read statistics of small RNAs
UF RF NON JON NOFF JOFF
Count % Count % Count % Count % Count % Count %
total_reads 15,364,727 13,895,311 15,310,134 17,043,189 15,849,260 16,064,294
high_quality 15,340,544 100 13,868,830 100 15,288,291 100 17,018,648 100 15,825,515 100 16,041,414 100
3’adapter_null 4,407 0.03 4,141 0.03 3,703 0.02 3,941 0.02 4,334 0.03 3,937 0.02
insert_null 6,029 0.04 1,148 0.01 3,681 0.02 2,750 0.02 2,995 0.02 4,423 0.03
5’adapter_contaminants 46,316 0.30 12,104 0.09 93,196 0.61 18,866 0.11 4,0797 0.26 38,204 0.24
smaller_than_18nt 23,051 0.15 33,526 0.24 32,945 0.22 42,170 0.25 66,057 0.42 62,461 0.39
polyA 727 0.00 590 0.00 1,298 0.01 712 0.00 911 0.01 529 0.00
clean_reads 15,260,014 99.48 13,817,321 99.63 15,153,468 99.12 16,950,209 99.60 15,710,421 99.27 15,931,860 99.32

Yanik et al.

Yanik et al. BMC Plant Biology 2013 13:10   doi:10.1186/1471-2229-13-10

Open Data