Open Access Highly Accessed Research article

Transcriptome analysis of stem development in the tumourous stem mustard Brassica juncea var. tumida Tsen et Lee by RNA sequencing

Quan Sun1, Guanfan Zhou2, Yingfan Cai1*, Yonghong Fan2, Xiaoyan Zhu13, Yihua Liu2, Xiaohong He1, Jinjuan Shen2, Huaizhong Jiang1, Daiwen Hu2, Zheng Pan1, Liuxin Xiang1, Guanghua He3, Daiwen Dong2 and Jianping Yang1

Author Affiliations

1 College of Bioinformation, Chongqing University of Posts and Telecommunications, Chongqing 400065, China

2 Institute of Chongqing Fuling Agricultural Sciences, Fuling 408000, China

3 Chongqing Key Laboratory of Application and Safety Control of Genetically Modified Crops, Southwest University, Chongqing 400716, China

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BMC Plant Biology 2012, 12:53  doi:10.1186/1471-2229-12-53

Published: 21 April 2012

Additional files

Additional file 1:

Table S1 Primers used in qRT-PCR for validating differentially expressed genes.

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Additional file 2:

Table S2 Top hits obtained by Blastx for the unigenes. Blastx against the nr, Swiss-Prot, KEGG and COG protein database was used with a cutoff E-value < 1e-5 (part).

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Additional file 3:

Table S3 KO's assigned of unigenes.

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Additional file 4:

Table S4 Expression level of unigenes in each library (part).

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Additional file 5:

Table S5 Discription of thirteen screened out genes. Expression ratios absolute values > 10 in six comparison groups were used for rule.

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Additional file 6:

Table S6 KO's assigned of screening 1024 different genes.

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Additional file 7:

Table S7 The unigenes' ID of screened out genes.

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