Table 1

genes with putative functions in transcriptional regulation or signalling whose expression changed by > 2-fold in roots of Arabidopsis seedlings expressing Spcdc25 compared to WT

Ratio Spcdc25/WT

t-test P-value

ATG code

Putative function


2.6

0.009

At5g61590

member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family


2.6

0.002

At1g12010

1-aminocyclopropane-1-carboxylate oxidase putative/acc oxidase putative


2.3

0.001

At5g59780

regulation of transcription, response to ethylene gibberellin, jasmonic acid, and salicylic acid stimuli


2.2

0.001

At5g20030

RNA binding protein


2.1

0.019

At5g54930

AT hook motif-containing protein; functions in: DNA binding


2.1

0.036

At1g48260

SNF1-related kinase (SnRK) member of the CBL-interacting protein kinases (CIPK17).


2.1

0.045

At5g53450

OBP3-responsive gene 1 (ORG1); functions in: protein kinase activity, kinase activity,


2.0

0.040

At1g69220

serine/threonine kinase (SIK1) similar to yeast gene PAK1 involved in cytokinesis, actin polarization.


2.0

0.042

At1g08320

bZIP family transcription factor


2.0

0.004

At3g56970

OBP3-RESPONSIVE GENE 2, member of the basic helix-loop-helix transcription factor family


0.2

0.000

At2g25490

Negative regulation of ethylene signalling F-box protein involved in the proteolysis of EIN3


0.3

0.002

At5g42020

Luminal binding protein (BiP2) involved proliferation of endosperm nuclei, response to stress


0.3

0.029

At5g14580

polyribonucleotide nucleotidyltransferase, involved in RNA processing, stability


0.4

0.034

At4g24190

SHD: ER-resident HSP90-like protein and is involved in regulation of meristem size and organization


0.4

0.020

At1g27320

AHK3: histidine kinase, a cytokinin receptor.


0.5

0.001

At1g20823

zinc finger (C3HC4-type RING finger) family protein, response to chitin, a plant-defense elicitor.


0.5

0.031

At2g27050

transcription factor, ethylene-insensitive3-like1 (EIL1), response to ethylene stimulus


0.5

0.044

At2g02170

remorin family protein; functions in: DNA binding, high expression in SAM


0.5

0.009

At1g49760

polyadenylate-binding protein, putative/PABP, putative, similar to poly(A)-binding protein,


0.5

0.019

At2g01150

RING-H2 finger protein ubiquitin-protein ligase activity


Spadafora et al. BMC Plant Biology 2012 12:45   doi:10.1186/1471-2229-12-45

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