Table 1

General statistics for cassava small RNA library processing and mapping

Non-inoculated reads

Inoculated reads


Total

31,434,907

15,968,516


High quality, adaptor-trimmed

15,084,481

11,871,330


Matching cassava genome

8,844,221

7,226,346


Matching cassava genome, Non-redundant (nr)

1,183,868

653,480


Not matching rRNAs, snoRNAs, tRNAs*

5,655,383

5,187,027


Not matching rRNAs, snoRNAs, tRNAs (nr)+

2,906,014

1,664,361


Matching Xam genome

45,416 (0.8%)

298,811 (5.2%)


Matching Xam genome (nr)

6,952 (0.2%)

80,850 (4.8%)


Matching known miRNAs

42,356 (0.7%)

122,273 (2.3%)


Matching known miRNAs (nr)

4,921 (0.1%)

3,398 (0.2%)


Known miRNA families

53

48


Matching cassava intergenic regions

522,080 (9.2%)

599,178 (11.5%)


Matching cassava intergenic regions (nr)

87,590 (3%)

64,536 (3.8%)


*Percentages and normalized values throughout the work were calculated on these total reads. +percentage for non-redundant reads were calculated based on these total reads

PĂ©rez-Quintero et al. BMC Plant Biology 2012 12:29   doi:10.1186/1471-2229-12-29

Open Data