Table 1

Overview about BLAST analyses in OPTIMAS-DW
BLAST type Query database Hit database Entries in hit database
BLASTX Maize Genome 3b.50 NCBI non redundant Peptides 7,987,196 proteins
BLASTN Maize Genome 3b.50 NCBI Zea mays Unigene Build 75 82,630 ESTs
BLASTN Maize Genome 3b.50 EMBL fungi ESTs 2,028,363 ESTs
BLASTX Maize Genome 4a.53 NCBI non redundant Peptides 7,987,196 proteins
(used for Blast2Go)
BLASTX OPTIMAS Oligo Set Uniref, version 2011-09-21

Colmsee et al.

Colmsee et al. BMC Plant Biology 2012 12:245   doi:10.1186/1471-2229-12-245

Open Data