Table 2

List of pineapple ESTs from MapMan maps with contig ID numbers (http://www.pgel.com.au webcite), Arabidopsis ID tag, normalized expression value and annotated gene description
Schematic Name Arabidopsis homologue CloneID Normalized Expression Levels MapMan Identifier
REDOX State-Peroxidase-Antioxidant Activity - Stress Overview
contig 422 At2g16060 12.2 AHB1 (ARABIDOPSIS HEMOGLOBIN 1)
contig 119 At2g28190 2.7 CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2)
contig 1366 At3g11630 2.5 2-cys peroxiredoxin, chloroplast (BAS1)
contig 3096 At4g35000 2.3 APX3 (ASCORBATE PEROXIDASE 3)
contig 3200 At1g08830 2.2 CSD1 (copper/zinc superoxide dismutase 1)
contig 37 At5g40370 1.6 GRXC2 (Glutaredoxin-C2)
contig 3227 At3g02870 1.5 VTC4 (2-bisphosphate nucleotidase)
contig 107 at5g39950 1.5 ATTRX2 (Arabidopsis thioredoxin h2)
Proteolysis Activity - Stress Overview
contig 122 At2g34080 −31.7 Fruit bromelain
contig 3033 At3g49340 −17.8 Fruit bromelain
contig 1322 At3g45630 −5.6 RNA recognition motif (RRM)
contig 3424 At2g43210 −5.2 UBX domain-containing protein
contig 756 At5g04250 −4.5 OTU-like cysteine protease family protein

Koia et al.

Koia et al. BMC Plant Biology 2012 12:240   doi:10.1186/1471-2229-12-240

Open Data