Deep-sequencing transcriptome analysis of chilling tolerance mechanisms of a subnival alpine plant, Chorispora bungeana
- Equal contributors
1 Key Laboratory of Cell Activities and Stress Adaptations, Ministry of Education, School of Life Sciences, Lanzhou University, Lanzhou, 730000, China
2 State Key Laboratory of Frozen Soil Engineering, Cold and Arid Regions Environmental and Engineering Research Institute, Chinese Academy of Sciences, Lanzhou, 730000, China
BMC Plant Biology 2012, 12:222 doi:10.1186/1471-2229-12-222Published: 21 November 2012
Additional file 1:
Complete list of unigenes with BLASTX hits.
Format: XLSX Size: 1.9MB Download file
Additional file 2:
Complete list of chilling regulated DEGs identified with fold change > =2 and q < 0.001.
Format: XLSX Size: 1013KB Download file
Additional file 3:
Complete list of chilling regulated DEGs identified with fold change > =2, q < 0.001 and RPKM > =1.
Format: XLSX Size: 988KB Download file
Additional file 4:
Chilling up-regulated TFs. 1. List of chilling up-regulated TFs in both ATH-SR and ATH-MA. 2. List all chilling up-regulated TFs in Arabidopsis (ATH-SR or ATH-MA). 3. All chilling up-regulated TFs (orthologs) in C. bungeana.
Format: DOCX Size: 43KB Download file
Additional file 5:
List of chilling up-regulated protein serine/threonine kinase in C. bungeana.
Format: DOCX Size: 28KB Download file
Additional file 6:
List of chilling regulated DEGs and all expressed genes of ATH-SR. 1. List of chilling up-regulated DEGs (SR). 2. List of chilling down-regulated DEGs (SR). 3. List all genes RPKM > =1 (SR).
Format: DOCX Size: 74KB Download file
Additional file 7:
List of chilling regulated DEGs and all expressed genes of ATH-MA. 1. List of chilling up-regulated DEGs (MA). 2. List of chilling down-regulated DEGs (MA). 3. List all expressed genes (MA).
Format: DOCX Size: 82KB Download file
Additional file 8:
Primers and reference gene selections. 1. Primers for reference gene selection. 2. Primers for qPCR verification. 3. Unigenes for qPCR reference gene selection. 4. geNorm results of reference gene selection.
Format: DOCX Size: 450KB Download file