Open Access Research article

The Plant Short-Chain Dehydrogenase (SDR) superfamily: genome-wide inventory and diversification patterns

Hanane Moummou12, Yvonne Kallberg3, Libert Brice Tonfack14, Bengt Persson56 and Benoît van der Rest17*

Author Affiliations

1 Université de Toulouse, INPT-ENSAT, UMR990 Génomique et Biotechnologie des Fruits, Avenue de l’Agrobiopole, BP 32607, Castanet-Tolosan, F-31326, France

2 Laboratory of Food Science, Faculty of Science Semlalia, University CADI AYYAD, Marrakech, Morocco

3 Bioinformatics Infrastructure for Life Sciences, Science for Life Laboratory, Centre for Molecular Medicine, Karolinska Institutet, SE-171 77, Stockholm, Sweden

4 Laboratory of Biotechnology and Environment, Unit of Plant Physiology and Improvement, Department of Plant Biology, Faculty of Science, University of Yaounde 1, PO BOX 812, Yaounde, Cameroon

5 Science for Life Laboratory, Department of Cell and Molecular Biology (CMB), Karolinska Institutet, SE-17177, Stockholm, Sweden

6 IFM Bioinformatics and Swedish e-Science Research Centre (SeRC), Linköping University, SE-58183, Linköping, Sweden

7 INRA, UMR990 Génomique et Biotechnologie des Fruits, 24 Chemin de Borde Rouge, Castanet-Tolosan, F-31326, France

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BMC Plant Biology 2012, 12:219  doi:10.1186/1471-2229-12-219

Published: 20 November 2012

Additional files

Additional file 1:

Table S1. Exhaustive inventory of plant SDRs.

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Additional file 2:

Table S2. List of ambiguous predictions (proteins only recognized by a single HMM with a low score).

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Additional file 3:

Figure S1. Full phylogenetic trees of SDR108E (A) and SDR110C (B) families. The evolutionary history was inferred using the Neighbor-Joining method. The percentage of replicate trees in which the associated taxa clustered together in the bootstrap test (500 replicates) are shown next to the branches.

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