Table 1

Statistics of the small RNA sequences generated from the five tissue types of B. rapa
Seedling Root Petiole Leaf Flower Total
Raw reads 258,431 22,729 17,263,448 21,372,578 8,737,275 47,654,461
Reads of 17 to 36 nt 243,640 21,680 11,813,169 20,598,405 8,124,108 40,801,002
Unique reads 156,651 17,771 2,219,348 5,150,968 2,925,823 9,130,544b
Genome matcha 51,147 5,184 509,173 1,575,267 1,106,694 2,752,756b
Unassembled sequence matcha 60,937 6,638 1,049,984 1,686,965 919,182 3,139,339b
NCBI NR database matcha 8,514 1,003 122,912 352,798 153,372 577,500b
No matcha 36,053 4,946 537,279 1,535,938 746,575 2,660,949b

a one mismatch is allowed, b non-redundant unique reads.

Kim et al.

Kim et al. BMC Plant Biology 2012 12:218   doi:10.1186/1471-2229-12-218

Open Data