Table 1

Tomato COBRA gene family in The SOL Genomics Network (SGN) and their sequence characteristics
Family name Gene code (SGN) Exonsa Amino Acidsb CCVS domain N-terminal signal peptide Potential ω- site
SlCOBL4 Solyc01g065530.2.1 2 648 yes yes S(624)
SlCOBL5 Solyc01g103860.2.1 5 423 yes no no
SlCOBL6 Solyc01g111050.2.1 5 469 yes no no
SlCOBRA-like Solyc02g065770.2.1 6 444 yes yes N (417)
SlCOBL7 Solyc02g080240.1.1 2 385 no yes no
SlCOBL8 Solyc02g080250.1.1 3 342 yes no no
SlCOBL1 Solyc02g089120.2.1 6 447 yes yes N(420)
SlCOBL9 Solyc02g089130.2.1 6 434 yes yes N(410)
SlCOBL10 Solyc03g070440.2.1 7 431 yes yes no
SlCOBL11 Solyc03g070460.1.1 3 116 no no no
SlCOBL12 Solyc03g114880.1.1 7 319 no no no
SlCOBL2 Solyc03g114890.2.1 6 401 yes yes no
SlCOBL13 Solyc03g114900.2.1 6 447 yes yes no
SlCOBL14 Solyc03g114910.2.1 6 458 yes yes N(430)
SlCOBL3 Solyc07g064200.2.1 3 615 yes yes no
SlCOBL15 Solyc09g075540.1.1 2 652 yes yes no
SlCOBL16 Solyc10g006450.2.1 2 671 yes yes no

a The number of Exons. bAmino acid residue number in each predicted SlCOBL protein. Predictions of N-terminal signal peptide and potential C-terminal GPI-Modification sites (ω- sites) were performed with SignalP Version 3.0 ( http://www.cbs.dtu.dk/services/SignalP/) webcite[49] and big-PI ( http://mendel.imp.ac.at/gpi/gpi_server.html webcite) [50], respectively.

Cao et al.

Cao et al. BMC Plant Biology 2012 12:211   doi:10.1186/1471-2229-12-211

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