Open Access Highly Accessed Research article

Identification of genes involved in the ACC-mediated control of root cell elongation in Arabidopsis thaliana

Marios Nektarios Markakis1, Tinne De Cnodder1, Michal Lewandowski1, Damien Simon1, Agnieszka Boron1, Daria Balcerowicz1, Thanaa Doubbo1, Ludivine Taconnat2, Jean-Pierre Renou3, Herman Höfte4, Jean-Pierre Verbelen1 and Kris Vissenberg1*

Author Affiliations

1 Biology Dept., Plant Growth and Development, Univ. Antwerp, Groenenborgerlaan 171, Antwerpen, 2020, Belgium

2 Unité Mixte de Recherche de Genomique Végétale, Institut National pour la Recherche Agronomique/Centre National pour la Recherche Scientifique, 2 rue Gaston Crémieux-CP 5708. F–91057, Evry Cedex, France

3 Institut de Recherche en Horticulture et Semences UMR1345 (INRA/Agrocampus-ouest/Université d’Angers), Centre Angers-Nantes/INRA-IRHS batiment B, 42 rue Georges Morel – BP 60057 49071, Beaucouzé cedex, France

4 Institut Jean-Pierre Bourgin, UMR1318 INRA-AgroParisTech, INRA Centre de Versailles-Grignon, Route de St-Cyr (RD10), F–78026, Versailles Cedex, France

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BMC Plant Biology 2012, 12:208  doi:10.1186/1471-2229-12-208

Published: 7 November 2012

Additional files

Additional file 1:

240 differentially expressed genes upon 3hr 5μM ACC treatment. The genes (locus identifiers) are presented together with their expression ratio and Bonferroni P-values.

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Additional file 2:

qPCR analysis of the 10 most up and down regulated genes upon 3 hr 5μM ACC addition to Arabidopsis roots. Expression is presented as relative % towards the gene’s expression under control conditions.

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Additional file 3:

Expression profiles in the root of the genes presented in Table 2. Data were extracted from the Arabidopsis eFP browser. A) ethylene-related genes, B) auxin-related genes, C) AGPs and HRGPs, D) peroxidases, E) 10 most up regulated genes, F) 10 most down regulated genes.

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Additional file 4:

Enriched Gene Ontology (GO) terms in the differentially expressed genes. A) cluster of up regulated genes, B) cluster of down regulated genes, with the legend linking the numbers to the GI terms.

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