Open Access Highly Accessed Research article

Transcriptome variation along bud development in grapevine (Vitis vinifera L.)

José Díaz-Riquelme1, Jérôme Grimplet1, José M Martínez-Zapater1 and María J Carmona2*

Author Affiliations

1 Instituto de Ciencias de la Vid y del Vino (CSIC, Universidad de La Rioja, Gobierno de La Rioja), CCT, C/ Madre de Dios 51, Logroño, 26006, Spain

2 Departamento de Biotecnología, Escuela Técnica Superior Ingenieros Agrónomos, Universidad Politécnica de Madrid, Avenida Complutense s/n, Madrid, 28040, Spain

For all author emails, please log on.

BMC Plant Biology 2012, 12:181  doi:10.1186/1471-2229-12-181

Published: 5 October 2012

Additional files

Additional file 1:

Table containing the RMA normalized expression values for all GrapeGen GeneChip® probesets in the analyzed samples together with their correspondences to genes in the 12X V1 version of grapevine reference genome and their annotations. This file also includes the component scores for each probe-set in the first three principal components.

Format: XLS Size: 13.5MB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 2:

Table containing the RMA normalized expression values for the probesets selected by PC1 component score (both positive and negative values) in the analyzed samples.

Format: XLS Size: 409KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 3:

Table containing the RMA normalized expression values for the probesets selected by PC2 component score (both positive and negative values) in the analyzed samples.

Format: XLS Size: 667KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 4:

Functional categories significantly enriched in the clusters selected by PC2 component score (both positive and negative values). Categories enriched in the positive cluster are depicted in green while those enriched in the negative one are in pink. Absolute values of the log10 transformed P-values were used for the bar diagram representing statistical signification, only categories with P-values < 0.05 were shown.

Format: PDF Size: 22KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 5:

Expression pattern of the two grapevine FLC homologs. Average expression values for each time-point are shown.

Format: PDF Size: 19KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data