Open Access Research article

Organ specificity and transcriptional control of metabolic routes revealed by expression QTL profiling of source--sink tissues in a segregating potato population

Bjorn Kloosterman14, AM Anithakumari12, Pierre-Yves Chibon12, Marian Oortwijn1, Gerard C van der Linden1, Richard GF Visser13 and Christian WB Bachem1*

Author Affiliations

1 Wageningen UR Plant Breeding, Wageningen University and Research Center, PO Box 386, 6700 AJ Wageningen, the Netherlands

2 Graduate School Experimental Plant Sciences, Wageningen, The Netherlands

3 Centre for BioSystems Genomics, P.O. Box 98, 6700 AA Wageningen, The Netherlands

4 KeyGene N.V., P.O. Box 216, 6700 AE Wageningen, The Netherlands

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BMC Plant Biology 2012, 12:17  doi:10.1186/1471-2229-12-17

Published: 7 February 2012

Additional files

Additional file 1:

Frequency distribution of eQTLs over the different potato chromosomes.

Format: XLSX Size: 9KB Download file

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Additional file 2:

Tissue specific and Tissue dependent eQTLs of tuber and leaf tissues belonging to the major carbohydrate metabolism groups.

Format: XLSX Size: 16KB Download file

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Additional file 3:

Schematic overview of tuber and leaf eQTL specificity for major CHO metabolism genes.

Format: PDF Size: 107KB Download file

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Additional file 4:

Hybridization specificity of genomic DNA from C and E parental clones.

Format: XLSX Size: 299KB Download file

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Additional file 5:

Tuber Cy3 and Cy5 raw data + genome info partI.

Format: XLSX Size: 18.8MB Download file

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Additional file 6:

Tuber Cy3 and Cy5 raw data + genome info partII.

Format: XLSX Size: 18.8MB Download file

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Additional file 7:

Tuber Cy3 and Cy5 raw data + genome info partIII.

Format: XLSX Size: 18.7MB Download file

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Additional file 8:

Tuber Cy3 and Cy5 qnormalized data + genome info partI.

Format: XLSX Size: 18.1MB Download file

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Additional file 9:

Tuber Cy3 and Cy5 qnormalized data + genome info partII.

Format: XLSX Size: 18MB Download file

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Additional file 10:

Tuber Cy3 and Cy5 qnormalized data + genome info partIII.

Format: XLSX Size: 8.9MB Download file

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Additional file 11:

Leaf Cy3 Leaf raw data + genome info partI.

Format: XLSX Size: 16MB Download file

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Additional file 12:

Leaf Cy3 Leaf raw data + genome info partII.

Format: XLSX Size: 12.6MB Download file

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Additional file 13:

Leaf Cy3 qnormalized + genome info partI.

Format: XLSX Size: 13.3MB Download file

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Additional file 14:

Leaf Cy3 qnormalized + genome info partII.

Format: XLSX Size: 11.3MB Download file

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Additional file 15:

Marker to Genome.

Format: XLSX Size: 25KB Download file

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Additional file 16:

4x44k 015425 POCI annotation.

Format: XLSX Size: 5.1MB Download file

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Additional file 17:

Genotypic scores CxE population.

Format: XLSX Size: 129KB Download file

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