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Open Access Highly Accessed Research article

Protein disorder in plants: a view from the chloroplast

Inmaculada Yruela12* and Bruno Contreras-Moreira123

Author Affiliations

1 Estación Experimental de Aula Dei, Consejo Superior de Investigaciones Científicas (EEAD-CSIC), Avda. Montañana, 1005, Zaragoza, 50059, Spain

2 Institute of Biocomputation and Physics of Complex Systems (BIFI), Universidad de Zaragoza, Mariano Esquillor, Edificio I + D, Zaragoza, 50018, Spain

3 Fundación ARAID, Zaragoza, Spain

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BMC Plant Biology 2012, 12:165  doi:10.1186/1471-2229-12-165

Published: 13 September 2012

Additional files

Additional file 1 :

Table S1.Distribution of predicted to-be-disordered segments with L ≥ 30, L ≥ 40 and L ≥ 50 in chloroplast, mitochondrial and nuclear plant proteomes.

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Additional file 2 :

Table S2.Statistical comparison of disorder content using Chi square tests (A) and Student's t tests (B).

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Additional file 3 :

Figure S1.Distribution of amino acid residues in disordered proteins in the plant proteomes. Nuclear (A), chloroplast (B), and mitochondrial (C) proteomes.

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Additional file 4 :

Table S3.Nucleus-encoded proteins with a putative orthologous copy in the chloroplast from Arabidopsis thaliana. 1ATC refers to proteins encoded by chloroplast genes.

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Additional file 5 :

Table S4.Selection results for Gene Ontology (GO) categories in intrinsically disordered proteins encoded by chloroplast genes and transferred to nuclear genome. A) biological process (P) GO categories; B) cellular components (C) GO categories; C) molecular function (F) GO categories.

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Additional file 6 :

Table S5.Selection results for gene ontology categories in non-disordered proteins encoded by chloroplast genes and transferred to nuclear genome. A) biological process (P) GO categories; B) cellular components (C) GO categories; C) molecular function (F) GO categories.

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Additional file 7 :

Table S6.Distribution of intrinsically disordered proteins in small (A) and large (B) ribosomal subunits from bacteria and plant chloroplast.

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Additional file 8 :

Table S7.Protein length of ribosomal proteins from bacteria and plant chloroplasts.

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