Table 9

GWAS results for trait thousand grain weight

Marker

Chr

Position

MAF

P-value

-log10(P)

R2 (%)

Effect

QTL

Reference QTL

Literature


SNP48

1H

55.49

0.47

0.0288

1.56

0.34

-2.19

QTL1_TGW


SNP56

1H

61.53

0.26

0.0128

1.92

0.39

SNP62

1H

66.70

0.25

0.0019

2.77

0.70

2.59

QTL2_TGW

vrs 3

[60]

SNP68

1H

72.43

0.09

0.0263

1.60

0.37


SNP76

1H

87.62

0.21

0.0225

1.67

0.38

SNP78

1H

88.23

0.26

0.0019

2.79

0.69

2.29

QTL3_TGW

SNP81

1H

92.04

0.28

0.0208

1.70

0.38


SNP137

2H

38.03

0.35

0.0259

1.61

0.40

-1.20

QTL4_TGW


SNP171

2H

63.53

0.10

0.006

2.26

0.50

SNP174

2H

63.53

0.41

0.029

1.55

0.35

2.27

QTL5_TGW

QTgw.pil-2H.2

[67,72]

SNP175

2H

63.53

0.10

0.006

2.26

0.50


SNP210

2H

82.75

0.36

0.0081

2.13

0.51

SNP215

2H

86.63

0.32

0.0267

1.59

0.38

1.33

QTL6_TGW

vrs1

[60]


SNP245

2H

117.91

0.42

0.0084

2.11

0.51

-1.66

QTL7_TGW


SNP262

2H

139.65

0.31

0.0091

2.07

0.49

-1.62

QTL8_TGW


SNP305

3H

47.09

0.16

0.0225

1.67

0.39

3.01

QTL9_TGW


SNP385

3H

98.49

0.37

0.0131

1.91

0.45

1.94

QTL10_TGW

[60]


SNP395

3H

111.42

0.37

0.0302

1.54

0.36

-1.35

QTL11_TGW

QTgw.S42-2H.a

[73]


SNP458

4H

26.19

0.34

0.0224

1.67

0.40

1.75

QTL12_TGW

int-c

[29,60]

SNP460

4H

26.66

0.26

0.0034

2.52

0.63


SNP467

4H

40.36

0.33

0.0007

3.21

0.74

SNP469

4H

40.36

0.17

0.0006

3.28

0.82

2.52

QTL13_TGW

QTgw.pil-4H.3

[72]


SNP643

5H

110.26

0.10

0.0312

1.52

0.28

-3.00

QTL14_TGW

QTgw.pil-5H.2

[72]


SNP663

5H

142.2

0.16

0.0004

3.45

0.87

SNP664

5H

142.2

0.16

0.0002

3.79

1.00

4.47

QTL15_TGW

QGwe.TaER-5H.2

[74]

SNP666

5H

142.2

0.15

0.0012

3.00

0.74


SNP709

5H

187.38

0.28

0.0082

2.12

0.50

2.02

QTL16_TGW

QTgw.pil-5H.4

[72]


SNP739

6H

43.83

0.08

0.016

1.82

0.43

SNP740

6H

44.77

0.42

0.0041

2.43

0.6

SNP741

6H

44.77

0.41

0.0064

2.23

0.55

-1.91

QTL17_TGW

SNP770

6H

55.94

0.31

0.003

2.58

0.54


SNP851

7H

34.82

0.43

0.0056

2.29

0.52

QGwe.HaTR-

SNP854

7H

37.55

0.36

0.0277

1.58

0.32

-1.88

QTL18_TGW

7H.1

[75]


SNP919

7H

88.65

0.13

0.0164

1.81

0.43

3.01

QTL19_TGW


SNP934

7H

129.91

0.24

0.0048

2.36

0.59

1.84

QTL20_TGW


SNP944

7H

143.68

0.12

0.0315

1.52

0.27

-1.37

QTL21_TGW

QTw.HaTR-7H.1

[72]


Significant markers associated for TGW, their MAF, P-value of association, variance explained by marker (R2), effect of most significant marker within the QTL interval, name of the QTL, and reference QTL or gene from literature.

Pasam et al. BMC Plant Biology 2012 12:16   doi:10.1186/1471-2229-12-16

Open Data