Table 8

GWAS results for trait plant height

Marker

Chr

Position

MAF

P-value

-log10(P)

R2 (%)

Effect

QTL

Reference QTL

Literature


SNP122

2H

8.57

0.13

0.0016

2.80

0.94

-5.64

QTL1_PHT


SNP136

2H

33.74

0.35

0.0138

1.86

0.54

SNP137

2H

38.03

0.35

0.0044

2.36

0.84

-5.23

QTL2_PHT

Ph2

[66]


SNP168

2H

59.21

0.16

0.0229

1.64

0.46

SNP171

2H

63.53

0.10

0.0155

1.81

0.51

6.73

QTL3_PHT

HT (marker:B15c)

[67]

SNP175

2H

63.53

0.10

0.0155

1.81

0.51


SNP199

2H

73.75

0.14

0.0224

1.65

0.49

4.72

QTL4_PHT

sdw3

[68]

SNP200

2H

74.37

0.25

0.0162

1.79

0.54


SNP254

2H

130.01

0.20

0.0117

1.93

0.56

-4.57

QTL5_PHT

QHt.StMo-2H.2

[69]

SNP256

2H

131.77

0.28

0.0175

1.76

0.5


SNP295

3H

36.49

0.13

0.0124

1.91

0.55

SNP303

3H

43.23

0.23

0.0083

2.08

0.61

-5.57

QTL6_PHT

QHt.HaMo-3H

[67,69]

SNP304

3H

46.31

0.35

0.0141

1.85

0.54


SNP312

3H

52.50

0.25

0.0002

3.55

1.15

SNP313

3H

52.50

0.42

0.0220

1.66

0.48

-5.80

QTL7_PHT

uzu

Grain genes database


SNP404

3H

126.27

0.39

0.0129

1.89

0.55

4.11

QTL8_PHT

sdw1/denso

[70,71]

SNP406

3H

127.10

0.37

0.0061

2.21

0.65


SNP427

3H

155.09

0.06

0.0120

1.92

0.56

-2.68

QTL9_PHT

SNP429

3H

162.15

0.06

0.0053

2.28

0.75


SNP519

4H

80.79

0.18

0.0306

1.51

0.4

3.70

QTL10_PHT

QHei.pil-4H.5

[72]


SNP575

5H

50.27

0.31

0.0028

2.55

0.8

5.30

QTL11_PHT

SNP588

5H

51.30

0.41

0.0159

1.80

0.5


SNP623

5H

85.93

0.16

0.0164

1.79

0.51

4.95

QTL12_PHT


SNP643

5H

110.26

0.10

0.0133

1.88

0.41

-5.58

QTL13_PHT

HT

[71]


SNP654

5H

132.63

0.44

0.0235

1.63

0.46

-4.15

QTL14_PHT

QHei.pil-5H.1

[72]


SNP722

6H

12.54

0.42

0.0229

1.64

0.41

-5.11

QTL15_PHT

SNP724

6H

16.97

0.30

0.0033

2.48

0.8


SNP757

6H

55.36

0.09

0.0060

2.24

0.64

-8.54

QTL16_PHT

SNP766

6H

55.36

0.32

0.0092

2.04

0.6


SNP831

6H

124.85

0.28

0.0038

2.42

0.74

-4.89

QTL17_PHT


SNP882

7H

73.75

0.45

0.0210

1.68

0.46

-4.23

QTL18_PHT

HT

[71]


SNP947

7H

144.45

0.41

0.0301

1.52

0.43

-3.77

QTL19_PHT


Significant markers associated for trait PHT, their MAF, P-value of association, variance explained by marker (R2), effect of the most significant marker within the QTL interval, name of the QTL, and the reference QTL or gene from literature.

Pasam et al. BMC Plant Biology 2012 12:16   doi:10.1186/1471-2229-12-16

Open Data