Table 10

GWAS results for trait starch content

SNP

Chr

Position

MAF

P-values

-log10(P)

2 (%)

Effect

QTL

Reference QTL

Literature


SNP20

1H

43.28

0.099

0.0076

2.12

0.3

-0.915

QTL1_SC

SNP22

1H

47.47

0.340

0.0045

2.35

0.34


SNP36

1H

51.23

0.396

0.0299

1.52

0.2

-0.78

QTL2_SC

SNP47

1H

55.49

0.495

0.0190

1.72

0.22


SNP53

1H

60.19

0.309

0.0105

1.98

0.28

SNP56

1H

61.53

0.264

0.0059

2.23

0.32

1.34

QTL3_SC

SNP66

1H

69.53

0.474

0.0148

1.83

0.25


SNP92

1H

101.45

0.288

0.0009

3.04

0.43

-0.70

QTl4_SC


SNP108

1H

126.01

0.108

0.0236

1.63

0.32

-0.76

QTL5_SC


SNP136

2H

33.74

0.349

0.0093

2.03

0.28

-0.63

QTL6_SC

Qsch2a

[76]


SNP174

2H

63.53

0.406

0.0142

1.85

0.25

SNP176

2H

63.53

0.184

0.0315

1.50

0.19

SNP180

2H

64.24

0.225

0.0066

2.18

0.31

-1.14

QTL7_SC

SNP181

2H

64.24

0.209

0.0137

1.86

0.26


SNP192

2H

71.12

0.474

0.0259

1.59

0.21

-0.68

QTl8_SC

QStr.StMo-2H

Grain genes


SNP222

2H

90.10

0.485

0.0277

1.56

0.22

-1.05

QTL9_SC

Qsch2b

[76]


SNP311

3H

51.73

0.214

0.0227

1.64

0.22

-1.15

QTL10_SC

SNP334

3H

55.57

0.373

0.0067

2.17

0.31


SNP358

3H

72.26

0.358

0.0087

2.06

0.29

0.96

QTL11_SC


SNP507

4H

65.05

0.491

0.0160

1.80

0.23

-0.55

QTL12_SC


SNP539

4H

111.68

0.175

0.0048

2.32

0.33

1.18

QTL13_SC


SNP543

4H

123.29

0.256

0.0039

2.41

0.35

1.10

QTL14_SC


SNP599

5H

58.70

0.351

0.0272

1.57

0.21

0.67

QTL_15SC

QStr.StMo-5H

Grain genes

SNP612

5H

65.49

0.445

0.0135

1.87

0.26


SNP643

5H

110.26

0.104

0.0080

2.10

0.27

-1.79

QTL16_SC


SNP725

6H

22.35

0.469

0.0117

1.93

0.27

0.73

QTL17_SC

SNP727

6H

24.36

0.433

0.0244

1.61

0.22


SNP795

6H

71.08

0.392

0.0282

1.55

0.2

-0.57

QTL18_SC

QStr.StMo-6H

Grain genes


SNP823

6H

112.32

0.299

0.0252

1.60

0.21

-0.81

QTL19_SC


SNP836

7H

0

0.199

0.0175

1.76

0.24

-0.74

QTL20_SC


SNP844

7H

12.42

0.096

0.0003

3.50

0.65

-1.72

QTL21_SC

waxy

Grain genes


SNP893

7H

78.22

0.127

0.0040

2.40

0.53

0.81

QTL22_SC


SNP918

7H

87.97

0.297

0.0296

1.53

0.17

0.38

QTL23_SC

Qsch7a

[76]


SNP930

7H

121.09

0.074

0.0083

2.08

0.24

-1.74

QTL24_SC


SNP951

7H

149.03

0.24

0.0168

1.77

0.27

-0.76

QTL25_SC


Significant markers associated for SC with K-model, their MAF, P-value of association, variance explained by marker (R2), effect of the most significant marker within the QTL interval, name of the QTL, and the reference QTL or gene from literature.

Pasam et al. BMC Plant Biology 2012 12:16   doi:10.1186/1471-2229-12-16

Open Data