Table 2

Annotations of sRNAs perfectly matchingA. thalianaandP. trichocarpagenomes
A. thaliana P. trichocarpa
Class* Unique Total Unique Total
Match genome 73,317 6,612,119 66,269 5,825,093
Known miRNA 584 1,402,527 375 1,383,562
r/t/sn/snoRNA 39,304 5,136,628 35,706 3,097,919
Repeat 2603 10,280
Exon-sense 21,764 35,844 6937 127,584
Exon-antisense 2171 6126 7125 608,685
Intron-sense 239 435 542 2221
Intron-antisense 244 681 678 1134
Un-annotated 6408 19,598 14,906 603,988

*sRNA categories, repeat, exon-sense, exon-antisense, intron-sense and intron-antisense, contain sRNAs perfectly matching the repeat sequences in the GenBank databases and Rfam database, the sense strand of a protein coding gene exon, the antisense strand of a protein coding gene exon, the sense strand of a protein coding gene intron and the antisense strand of a protein coding gene intron, respectively.

Wan et al.

Wan et al. BMC Plant Biology 2012 12:146   doi:10.1186/1471-2229-12-146

Open Data