Validation rates of Maq-120 SNPs according to SNP features. A) SNPs classified as hemi- (red line) or simple-SNPs (black line). B) Common SNPs are those identified in both the Maq-default and Maq-120 analyses (black line), whereas the Maq-120 unique SNPs (red line) where only identified in Maq-120. The total number of SNPs evaluated at each coverage depth where 81 (8-fold), 47 (12-fold), and 30 (16-fold).
Trick et al. BMC Plant Biology 2012 12:14 doi:10.1186/1471-2229-12-14