Table 3

Candidate genes for control of fruit polyphenolic content found in the apple gene prediction set (Additional File 2; figure S1).

Symbol

Gene name

Genbank accession

Apple gene prediction

LG

Position (kb)


PAL

phenylalanine ammonia lyase

ES790093

MDP0000191304

4

8,075

MDP0000388769

12

15,419

C4H

cinnamate 4-hydroxylase

EB139247

MDP0000229348

11

5,193

MDP0000225698

3

5,531

HCT/HQT

hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyl transferase

AM690438

MDP0000264424

9

27,594

(artichoke HQT1)

MDP0000307780

17

19,929

C3H

p-coumarate 3-hydroxylase

NP_850337

MDP0000466557

8

35,073

MDP0000836708

15

53,887

CHS

chalcone synthase

AB074485

MDP0000686661

9

16,919

MDP0000686666

9

16,932

MDP0000302905

14

26,679

CHI

chalcone isomerase

CN946541

MDP0000759336

14

12,382

MDP0000682953

1

20,836

MDP0000205890

11

19,398

F3H

flavanone 3-hydroxylase

AB074486

MDP0000704377

2

11,905

MDP0000139343

5

23,797

F3'H

flavanone 3'-hydroxylase

ACR14867

MDP0000190489

6

26,649

MDP0000286933

14

31,156

DFR

dihydroflavonol reductase

AF117268

MDP0000494976

12

26,022

MDP0000440654

8

4,393

ANS

anthocyanidin synthase (LDOX)

AF117269

MDP0000360447

6

17,129

UFGT

UDP-glucose flavonoid 3-O-glucosyl transferase

AF117267

MDP0000376418

9

31,316

MDP0000706999

7

14,018

FLS

flavonol synthase

EB137300

MDP0000260404

8

17,498

LAR

leucoanthocyanidin reductase

AY830131

MDP0000376284

16

1,536

AY830132

MDP0000140621

13

2,849

ANR

anthocyanidin reductase (Banyuls)

DQ099803

MDP0000243194

5

2,430

MDP0000494976

12

26,022

GT1

glucosyl transferase

EB124403

MDP0000146703

1

14,114

MDP0000875654

7

19517

GT2

glucosyl transferase

EB141701

MDP0000316379

14

16,678


The approximate physical position on the apple linkage group (LG) is given in kilobases (kb) from the top of the LG.

Chagné et al. BMC Plant Biology 2012 12:12   doi:10.1186/1471-2229-12-12

Open Data