Table 3

Distribution of polymorphic markers into different repeat classes

SSR type

Repeat classes

Number of markers

synthesized

Number of markers

amplified

Number of polymorphic

markers

PIC value

Number of

alleles


Compound

657

626 (95.28%)

227 (36.26%)

0.08-0.88(0.58)

2-12 (5.74)

Perfect

Class I

NN

639

592 (92.64%)

236 (39.86%)

0.08-0.90 (0.60)

2-14 (6.55)

NNN

200

194 (97%)

66 (34.02%)

0.08-0.85 (0.60)

2-13 (5.87)

NNNN

62

61(98.38%)

14 (22.95%)

0.28-0.81 (0.50)

3-9 (4.71)

NNNNN

10

10 (100%)

2 (20%)

0.52-0.76 (0.64)

5-7 (6)

NNNNNN

43

43 (100%)

10 (23.25%)

0.52-0.76 (0.64)

2-7 (4.4)

Total

954

900 (94.33%)

328 (36.44%)

Class II

NN

1,006

987 (98.11%)

219 (22.18%)

0.08-0.83 (0.53)

2-9 (4.9)

NNN

455

451 (99.12%)

68 (15.07%)

0.08-0.74 (0.48)

2-6 (4.4)

Total

1,461

1,438 (98.42%)

287 (19.95%)

Grand Total

3,072

2,964 (96.48%)

842 (28.40%)


Bohra et al. BMC Plant Biology 2011 11:56   doi:10.1186/1471-2229-11-56

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