Table 1

Number of synonymous and non-synonymous substitutions in the alignments of the coding region of LEAFY and cGAPDH and parameter estimates for the null hypothesis (H0) of the selection analyses (one ω for all alleles) employed to codeml within PAML.

Gene

LEAFY

cGAPDH


Length of coding region*

1119

789

No. of synonymous substitutions

21

4

No. of non-synonymous substitutions

8

1

Indels

2

-

Parameter estimate for H0 (one ω for all alleles)

dS = 0.1126, dN = 0.0190, ω = 0.1688

lnL = -1715.88, k = 1.472

dS = 0.0277, dN = 0.0074

ω = 0.2666

lnL = -1023.59, k = 1.559


*Sequences of coding region are not complete, approximately 50 bp are missing in LEAFY and approximately 120 bp are missing in cGAPDH at both ends to start and stop codon, respectively.

Ritz et al. BMC Plant Biology 2011 11:37   doi:10.1186/1471-2229-11-37

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