Table 3

Overlapping transcriptome responses of UniTags that are highly up-regulated in roots and nodules upon salt stress

Tag ID

Protein

Fold induction (roots)

Fold induction (nodules)

Associated process

Uniprot ID


STCa-18884

Early nodulin

60,95

61,44

Nodulation

NO40_SESRO

STCa-22299

Predicted protein

20,70

13,65

Unknown

A9TXV0_PHYPA

STCa-17434

Chitinase-related agglutinin

18,67

13,65

Defense

A1YZD2_ROBPS

STCa-24417

Lipoxygenase

24,34

12,79

Lypid metabolism

B7Z177_PEA

STCa-5357

Phosphatidylinositol transfer-like protein III

8,12

11,94

Unknown

Q94FN1_LOTJA

STCa-175

Transcription elongation factor 1

13,79

10,24

Transcription

ELOF1_ARATH

STCa-7855

Abnormal suspensor SUS2

9,74

10,24

Unknown

UPI000016331D

STCa-705

MAP kinase protein

8,12

10,24

Signal transduction

Q9SMJ7_CICAR

STCa-5894

General substrate transporter

34,09

8,53

Transport

A2Q5Z1_MEDTR

STCa-5877

Alternative oxidase

30,85

8,53

Redox homeostasis

Q84KA1_CROSA

STCa-1885

Mob1-like protein

19,47

8,53

Cytokinesis

Q2WBN3_MEDFA

STCa-170

Mob1-like protein

12,17

8,53

Cytokinesis

Q2WBN3_MEDFA

STCa-16125

Cytochrome c oxidase subunit 6b

11,36

8,53

Redox homeostasis

Q8LD51_ARATH

STCa-8434

Fiber protein Fb2

10,55

8,53

Unknown

Q8GT87_GOSBA

STCa-18178

Probable histone H2A.2

9,74

8,53

DNA stability

H2A2_MEDTR

STCa-15648

GR395157.1 C.arietinum EST

22,30

23,87

Uncharacterized

-

STCa-19240

GR916593.1 C.arietinum EST

10,54

10,23

Uncharacterized

-

STCa-11740

GR408054.1 C.arietinum EST

10,54

11,94

Uncharacterized

-

STCa-15130

Contig45449 C.arietinum EST

8,11

8,53

Uncharacterized

-

STCa-7445

Contig739 C.arietinum EST

17,84

10,23

Uncharacterized

-

STCa-1958

No homologous EST

14,61

13,65

Un-annotated

-

STCa-8135

No homologous EST

8,11

8.53

Un-annotated

-


Threshold in organ-wise differential expression: R(ln) 2.0 (8-fold)

Threshold in stress-treatment differential expression: R(ln) 2.0 (8-fold)

Molina et al. BMC Plant Biology 2011 11:31   doi:10.1186/1471-2229-11-31

Open Data