Table 1 |
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|
The top 10 novel miRNAs predicted from both arms of the miRNA precursor |
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|
miRID |
Location |
Strand (+/-) |
Energy (kcal/mol) |
Sequence of 5p |
Sequence of 3p |
Mock (count) |
Drought (count) |
Salinity (count) |
Alkalinity (count) |
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|
|
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|
5p |
3p |
5p |
3p |
5p |
3p |
5p |
3p |
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|
|
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|
Gma-m001 |
Gm18:61442586:61442692 |
- |
-44.1 |
CTGACAGAAGATAGAGAGCAC |
- |
3395 |
- |
3248 |
- |
4830 |
- |
2216 |
- |
|
Gma-m002 |
Gm02:837420:837549 |
+ |
-56.5 |
CAGGGGAACAGGCAGAGCATG |
- |
3672 |
- |
2573 |
- |
2945 |
- |
3159 |
- |
|
Gma-m003 |
Gm12:3176108:3176377 |
+ |
-69.67 |
TCCATTGTCGTCCAGCGGTTA |
- |
3282 |
- |
3673 |
- |
2931 |
- |
1186 |
- |
|
Gma-m004 |
Gm19:40699070:40699221 |
- |
-65.8 |
TGGGTGAGAGAAACGCGTATC |
TACGGGTCGCTCTCACCTAGG |
367 |
879 |
491 |
1053 |
186 |
1083 |
125 |
329 |
|
Gma-m005 |
Gm14:5324794:5324912 |
+ |
-44 |
AGCCAAGAATGACTTGCCGGAA |
CGGGCAAGTTGTTTTTGGCTAC |
337 |
560 |
475 |
644 |
438 |
471 |
175 |
173 |
|
Gma-m006 |
Gm09:16565920:16566038 |
- |
-44.7 |
AGAGGTGTTTGGGATGAGAGA |
CCTCATTCCAAACATCATCTAA |
1596 |
102 |
1695 |
138 |
777 |
128 |
335 |
53 |
|
Gma-m007 |
Gm18:61452908:61452997 |
- |
-41 |
GGAATGGGCTGATTGGGAAGT |
- |
835 |
- |
781 |
- |
813 |
- |
598 |
- |
|
Gma-m008 |
Gm02:30498945:30499130 |
- |
-70.5 |
CTGGGTGAGAGAAACACGTAT |
ACGGGTCGCTCTCACCTGGAG |
85 |
665 |
170 |
635 |
78 |
714 |
43 |
264 |
|
Gma-m009 |
Gm13:34382988:34383131 |
- |
-57.37 |
TCATTGAGTGCAGCGTTGATG |
TATTGACGCTGCACTCAATCA |
332 |
811 |
187 |
744 |
202 |
340 |
142 |
227 |
|
Gma-m010 |
Gm06:10859290:10859391 |
- |
-33.76 |
- |
CGAGCCGAATCAATACCACTC |
- |
658 |
- |
693 |
- |
515 |
- |
355 |
|
|
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|
Li et al. BMC Plant Biology 2011 11:170 doi:10.1186/1471-2229-11-170 |
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