Open Access Highly Accessed Research article

Fortunella margarita Transcriptional Reprogramming Triggered by Xanthomonas citri subsp. citri

Abeer A Khalaf12*, Frederick G Gmitter2, Ana Conesa3, Joaquin Dopazo3 and Gloria A Moore1

Author Affiliations

1 Plant Molecular and Cellular Biology Program (PMCB), Horticultural Sciences Department, University of Florida, Gainesville, Fl., 32611,USA

2 PMCB, Citrus Research and Education Center, University of Florida, Lake Alfred, Fl., USA

3 Centro de Investigación Príncipe Felipe,Valencia, SPAIN

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BMC Plant Biology 2011, 11:159  doi:10.1186/1471-2229-11-159

Published: 11 November 2011

Additional files

Additional file 1:

Figure S1. Similarity of the query set with the NCBI database.

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Additional file 2:

Figure S2. Distribution of the cut off for the e-value after blastx to NCBI nr.

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Additional file 3:

Figure S3. Species distribution chart of kumquat transcripts after blastx to NCBI nr.

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Additional file 4:

Table S1. Kumquat GO distribution analysis with sequence IDs, descriptions and annotation to each gene ontology category.

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Additional file 5:

Figure S4. A maSigPro enriched Multilevel Pie chart illustrating the distribution of Molecular Functions within the statistically significant (P < 0.025 in single t-test) kumquat expressed genes on the chip.

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Additional file 6:

Figure S5. A chart of the Cellular Components distribution within the maSigPro enriched statistically significant (P < 0.025 in single t-test) kumquat expressed genes in the chip.

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Additional file 7:

Table S2. Differentially expressed ASCA-selected list of genes, at statistically significant levels, including p values, M values.

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Additional file 8:

Table S3. Differentially expressed maSigPro-selected list of genes, including p values, M values.

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Additional file 9:

Table S4. Combined analysis of statistically significant maSigPro+ASCA selected genes (P value≤ 0.05).

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Additional file 10:

Figure S6. Quantitative realtime PCR (qRT-PCR) analyses of six selected kumquat ESTs (AAM60932 ABM67698, AA089566, AAk81874, AAC35981, AAV91900) in kumquat inoculated with Xanthomonas axonopodis pv. citri strain using a (5 × 108cfu/ml) concentration of the Miami A strain X04-59. Leaf tissue was sampled for both inoculated and mock-inoculated plants at 0, 6, 24, 48, 72 and 120 hpi. (An average of three independent biological replications).

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Additional file 11:

Table S5. Sequence data from this work have been deposited in the NCBI Genbank database libraries [Genbank: GW687757to GW690680].

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