Table 3

Genotyping efficiency and reliability of the 48 SNP set

N° Plants

Rate


Genotyped*

1277

Complete genotype

990

0.775

> 95% genotype

1155

0.904

SNP highest genotyping success rate

1275

(SNP697_296)

0.998

SNP lowest genotyping success rate

1139

(SNP325_65)

0.892


N° individual SNP genotypes

Rate


Total

60019

Obtained

58256

0.971

N° mistaken genotypes

3

0.000051


* Excluding 1 SNP that did not work in this experiment and 65 plants for which none SNP genotype could be established.

Cabezas et al. BMC Plant Biology 2011 11:153   doi:10.1186/1471-2229-11-153

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